Variant report

Variant	rs7754871
Chromosome Location	chr6:35347118-35347119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35339706..35342371-chr6:35345441..35347439,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11571504	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13362808	0.82[ASN][1000 genomes]
rs57648364	0.82[ASN][1000 genomes]
rs59137976	0.82[ASN][1000 genomes]
rs6457815	0.80[AMR][1000 genomes]
rs6457816	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901410	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902123	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919334	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922548	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937088	0.91[ASN][1000 genomes]
rs6942357	0.96[ASN][1000 genomes]
rs73413718	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7739752	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296148	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470001	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470007	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470016	0.82[ASN][1000 genomes]
rs9658067	0.82[ASN][1000 genomes]
rs9658083	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658100	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658125	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:35331200-35350800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:35338200-35356400	Weak transcription	Pancreas	Pancrea
4	chr6:35338400-35350800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:35338600-35359400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:35338800-35350600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:35338800-35353400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:35339000-35351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:35339200-35348600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:35339200-35350200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:35339200-35350600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:35339200-35353400	Weak transcription	Left Ventricle	heart
14	chr6:35339200-35353400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:35339200-35356600	Weak transcription	Esophagus	oesophagus
16	chr6:35339400-35349400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:35339400-35350800	Weak transcription	Right Atrium	heart
18	chr6:35339400-35353600	Weak transcription	Small Intestine	intestine
19	chr6:35339600-35348400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:35339600-35348600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:35339600-35350800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:35339600-35350800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:35339600-35350800	Weak transcription	Colonic Mucosa	Colon
24	chr6:35339600-35353400	Weak transcription	HMEC	breast
25	chr6:35339600-35353600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:35339600-35357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:35339800-35347200	Weak transcription	K562	blood
28	chr6:35339800-35348600	Weak transcription	NHDF-Ad	bronchial
29	chr6:35339800-35349600	Weak transcription	Adipose Nuclei	Adipose
30	chr6:35339800-35350400	Weak transcription	Right Ventricle	heart
31	chr6:35339800-35354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:35340000-35347200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:35340000-35350400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:35340000-35350600	Weak transcription	Fetal Intestine Large	intestine
35	chr6:35340000-35357600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:35340400-35350800	Weak transcription	Spleen	Spleen
37	chr6:35340600-35359400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:35340800-35349600	Weak transcription	Liver	Liver
39	chr6:35341000-35348600	Weak transcription	NH-A	brain
40	chr6:35341800-35354600	Weak transcription	NHEK	skin
41	chr6:35342000-35347400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:35342000-35349400	Weak transcription	Psoas Muscle	Psoas
43	chr6:35342000-35353400	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:35344400-35347800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:35344400-35358000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:35344600-35348600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:35345000-35351000	Strong transcription	Primary T cells from cord blood	blood
48	chr6:35345200-35347400	Enhancers	Fetal Brain Female	brain
49	chr6:35345200-35353600	Weak transcription	Colon Smooth Muscle	Colon
50	chr6:35345200-35355800	Weak transcription	GM12878-XiMat	blood

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