Variant report

Variant	rs6922548
Chromosome Location	chr6:35353523-35353524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35352372..35354969-chr6:35356317..35359445,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1053046	0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs11571504	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13362808	0.82[ASN][1000 genomes]
rs3213573	1.00[JPT][hapmap]
rs3777744	0.82[ASW][hapmap];0.82[MKK][hapmap]
rs57648364	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59137976	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6457813	1.00[JPT][hapmap]
rs6457815	1.00[MEX][hapmap]
rs6457816	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6900530	1.00[JPT][hapmap]
rs6901410	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906237	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs6919334	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937088	0.91[ASN][1000 genomes]
rs6942357	0.96[ASN][1000 genomes]
rs707969	1.00[JPT][hapmap]
rs73413718	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7739752	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746988	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7754871	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296154	1.00[JPT][hapmap]
rs9470001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470007	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470016	0.82[ASN][1000 genomes]
rs9658067	0.82[ASN][1000 genomes]
rs9658083	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658100	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658119	0.85[GIH][hapmap]
rs9658125	1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35338200-35356400	Weak transcription	Pancreas	Pancrea
2	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:35338600-35359400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:35339200-35356600	Weak transcription	Esophagus	oesophagus
5	chr6:35339400-35353600	Weak transcription	Small Intestine	intestine
6	chr6:35339600-35353600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:35339600-35357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:35339800-35354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:35340000-35357600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:35340600-35359400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:35341800-35354600	Weak transcription	NHEK	skin
12	chr6:35344400-35358000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:35345200-35353600	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:35345200-35355800	Weak transcription	GM12878-XiMat	blood
15	chr6:35345600-35353600	Weak transcription	Fetal Lung	lung
16	chr6:35345600-35353800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:35345600-35378400	Weak transcription	Aorta	Aorta
18	chr6:35346200-35359200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:35346200-35359800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:35346400-35353600	Weak transcription	Brain Anterior Caudate	brain
21	chr6:35347400-35357600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:35347600-35359200	Weak transcription	Brain Angular Gyrus	brain
23	chr6:35347600-35359200	Weak transcription	Brain Substantia Nigra	brain
24	chr6:35348000-35353600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:35349400-35353600	Weak transcription	Lung	lung
26	chr6:35349600-35359200	Weak transcription	Gastric	stomach
27	chr6:35350000-35353600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:35350000-35353600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:35350200-35358000	Weak transcription	Adipose Nuclei	Adipose
30	chr6:35350200-35359400	Weak transcription	Liver	Liver
31	chr6:35350400-35358400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:35351000-35353600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:35351000-35353600	Weak transcription	Placenta	Placenta
34	chr6:35351000-35355800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr6:35351000-35356000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr6:35351000-35357800	Weak transcription	Right Atrium	heart
37	chr6:35351000-35359000	Weak transcription	Primary T cells from cord blood	blood
38	chr6:35351000-35359200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:35351000-35359400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:35351000-35360200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr6:35351000-35360800	Weak transcription	Primary B cells from cord blood	blood
42	chr6:35351000-35363400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:35351200-35353600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:35351200-35353600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:35351200-35353600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:35351200-35353600	Weak transcription	Colonic Mucosa	Colon
47	chr6:35351200-35353600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:35351200-35353600	Weak transcription	Spleen	Spleen
49	chr6:35351200-35353600	Weak transcription	NHLF	lung
50	chr6:35351200-35354400	Weak transcription	H1 Cell Line	embryonic stem cell

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