Variant report

Variant	rs9658119
Chromosome Location	chr6:35365967-35365968
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35364935..35367587-chr6:35369436..35372009,4	K562	blood:
2	chr6:35364935..35367619-chr6:35369623..35372118,3	K562	blood:
3	chr6:35364744..35367159-chr6:35371168..35373202,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1053046	1.00[GIH][hapmap]
rs1929848	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2395617	1.00[CHB][hapmap]
rs6457815	1.00[CHB][hapmap]
rs6457816	0.85[GIH][hapmap]
rs6901410	0.85[GIH][hapmap]
rs6919334	0.85[GIH][hapmap]
rs6919534	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6922548	0.85[GIH][hapmap]
rs6937124	1.00[CHB][hapmap];0.85[GIH][hapmap]
rs729925	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs734538	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs763155	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs763157	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7739752	0.85[GIH][hapmap]
rs7751726	1.00[CHB][hapmap]
rs7770619	1.00[CHB][hapmap]
rs9296148	0.85[GIH][hapmap]
rs9394282	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9462081	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9470007	0.85[GIH][hapmap]
rs9658077	1.00[CHB][hapmap]
rs9658081	1.00[CHB][hapmap]
rs9658085	1.00[CHB][hapmap]
rs9658089	1.00[CHD][hapmap]
rs9658100	0.85[GIH][hapmap]
rs9658118	1.00[CHD][hapmap]
rs9658136	1.00[CHD][hapmap]
rs9658151	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9658119	TULP1	cis	parietal	SCAN
rs9658119	MAPK13	cis	brain	BrainEAC
rs9658119	C6orf227	cis	cerebellum	SCAN

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:35345600-35378400	Weak transcription	Aorta	Aorta
3	chr6:35354000-35372400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:35359600-35369200	Weak transcription	Fetal Kidney	kidney
5	chr6:35359800-35378800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:35360000-35366400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:35360000-35378200	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:35360000-35378400	Weak transcription	HSMMtube	muscle
9	chr6:35360000-35379000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:35360000-35382600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:35360400-35372000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:35360400-35372200	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:35360600-35372400	Weak transcription	Brain Anterior Caudate	brain
14	chr6:35360600-35378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:35360800-35367800	Weak transcription	Liver	Liver
16	chr6:35361000-35378000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:35361000-35378600	Weak transcription	Adipose Nuclei	Adipose
18	chr6:35361000-35378600	Weak transcription	NHLF	lung
19	chr6:35361000-35378800	Weak transcription	Psoas Muscle	Psoas
20	chr6:35361200-35376200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:35361200-35378600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:35361400-35367800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:35361800-35367800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:35361800-35385800	Weak transcription	Small Intestine	intestine
25	chr6:35362000-35368800	Weak transcription	Right Ventricle	heart
26	chr6:35362000-35378000	Weak transcription	Spleen	Spleen
27	chr6:35362200-35367800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:35362200-35368600	Weak transcription	Lung	lung
29	chr6:35362200-35378400	Weak transcription	Primary B cells from cord blood	blood
30	chr6:35362200-35378400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:35362200-35380000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:35362600-35368800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:35362800-35368000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:35362800-35370200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:35363000-35369200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:35363400-35378200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:35363600-35369000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:35363800-35368000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:35363800-35371600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:35364000-35378000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr6:35364600-35366000	Enhancers	HMEC	breast
42	chr6:35364600-35366400	Enhancers	Fetal Heart	heart
43	chr6:35364600-35366600	Enhancers	Duodenum Mucosa	Duodenum
44	chr6:35364600-35366600	Enhancers	K562	blood
45	chr6:35364600-35366800	Genic enhancers	Fetal Intestine Small	intestine
46	chr6:35364600-35367000	Enhancers	Fetal Intestine Large	intestine
47	chr6:35364800-35366000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr6:35364800-35366200	Enhancers	H9 Cell Line	embryonic stem cell
49	chr6:35364800-35366200	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr6:35364800-35366200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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