Variant report

Variant	rs9658089
Chromosome Location	chr6:35345159-35345160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35343822..35346553-chr6:35354623..35356533,2	K562	blood:
2	chr6:35343876..35345476-chr6:35348637..35350211,2	K562	blood:
3	chr6:35342473..35346671-chr6:35347993..35350211,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1929848	1.00[CHD][hapmap]
rs35723291	1.00[EUR][1000 genomes]
rs6915115	1.00[CEU][hapmap]
rs6919534	1.00[CHD][hapmap]
rs6935950	1.00[CEU][hapmap]
rs729925	1.00[CHD][hapmap]
rs734538	1.00[CHD][hapmap]
rs763155	1.00[CHD][hapmap]
rs763157	1.00[CHD][hapmap]
rs7739161	1.00[CEU][hapmap]
rs9394282	1.00[CHD][hapmap]
rs9462081	1.00[CHD][hapmap]
rs9658108	1.00[CEU][hapmap]
rs9658118	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs9658119	1.00[CHD][hapmap]
rs9658136	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs9658151	1.00[CHD][hapmap]
rs9658174	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:35331200-35350800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:35331600-35345400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35331600-35345400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:35338200-35356400	Weak transcription	Pancreas	Pancrea
6	chr6:35338400-35350800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:35338600-35345400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:35338600-35359400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:35338800-35350600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:35338800-35353400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:35339000-35351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:35339200-35348600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:35339200-35350200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:35339200-35350600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:35339200-35353400	Weak transcription	Left Ventricle	heart
17	chr6:35339200-35353400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:35339200-35356600	Weak transcription	Esophagus	oesophagus
19	chr6:35339400-35345400	Weak transcription	Brain Angular Gyrus	brain
20	chr6:35339400-35346200	Weak transcription	HSMMtube	muscle
21	chr6:35339400-35349400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:35339400-35350800	Weak transcription	Right Atrium	heart
23	chr6:35339400-35353600	Weak transcription	Small Intestine	intestine
24	chr6:35339600-35348400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:35339600-35348600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:35339600-35350800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:35339600-35350800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:35339600-35350800	Weak transcription	Colonic Mucosa	Colon
29	chr6:35339600-35353400	Weak transcription	HMEC	breast
30	chr6:35339600-35353600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:35339600-35357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:35339800-35347200	Weak transcription	K562	blood
33	chr6:35339800-35348600	Weak transcription	NHDF-Ad	bronchial
34	chr6:35339800-35349600	Weak transcription	Adipose Nuclei	Adipose
35	chr6:35339800-35350400	Weak transcription	Right Ventricle	heart
36	chr6:35339800-35354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:35340000-35347200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:35340000-35350400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:35340000-35350600	Weak transcription	Fetal Intestine Large	intestine
40	chr6:35340000-35357600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:35340400-35350800	Weak transcription	Spleen	Spleen
42	chr6:35340600-35359400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:35340800-35349600	Weak transcription	Liver	Liver
44	chr6:35341000-35346000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:35341000-35347000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:35341000-35348600	Weak transcription	NH-A	brain
47	chr6:35341400-35346400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:35341400-35346400	Weak transcription	Brain Substantia Nigra	brain
49	chr6:35341800-35354600	Weak transcription	NHEK	skin
50	chr6:35342000-35345400	Weak transcription	Brain Anterior Caudate	brain

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