Variant report

Variant	rs6457813
Chromosome Location	chr6:35317301-35317302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35315105..35319537-chr6:35325978..35330834,4	K562	blood:
2	chr6:35310212..35313058-chr6:35313527..35317832,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1053046	1.00[JPT][hapmap]
rs11961212	0.87[YRI][hapmap]
rs13362808	0.89[ASN][1000 genomes]
rs2284197	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3213573	1.00[JPT][hapmap]
rs57060566	0.88[ASN][1000 genomes]
rs58114880	0.94[ASN][1000 genomes]
rs59756313	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61333739	0.94[ASN][1000 genomes]
rs6457814	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6457816	1.00[JPT][hapmap]
rs6900530	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6901410	1.00[JPT][hapmap]
rs6902123	1.00[JPT][hapmap]
rs6906237	1.00[JPT][hapmap]
rs6915410	0.83[ASN][1000 genomes]
rs6919334	1.00[JPT][hapmap]
rs6920146	0.87[YRI][hapmap]
rs6922548	1.00[JPT][hapmap]
rs6937510	0.87[YRI][hapmap]
rs707969	1.00[JPT][hapmap]
rs73411747	0.94[ASN][1000 genomes]
rs73411802	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73413704	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7739752	1.00[JPT][hapmap]
rs7746988	1.00[JPT][hapmap]
rs7750906	0.87[YRI][hapmap]
rs7771474	0.87[YRI][hapmap]
rs9296148	1.00[JPT][hapmap]
rs9296154	1.00[JPT][hapmap]
rs9470001	1.00[JPT][hapmap]
rs9470007	1.00[JPT][hapmap]
rs9470016	0.89[ASN][1000 genomes]
rs9658067	0.89[ASN][1000 genomes]
rs9658083	1.00[JPT][hapmap]
rs9658100	1.00[JPT][hapmap]
rs9658125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9942488	0.94[ASN][1000 genomes]
rs9942501	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:35311600-35320400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:35311600-35327600	Weak transcription	A549	lung
8	chr6:35311800-35318400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:35311800-35320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:35311800-35324000	Weak transcription	Right Atrium	heart
11	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
12	chr6:35312000-35318400	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
14	chr6:35312200-35318200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:35312200-35326400	Weak transcription	Fetal Brain Female	brain
16	chr6:35312400-35317600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:35312600-35317600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:35312600-35324600	Weak transcription	Brain Germinal Matrix	brain
19	chr6:35312600-35324800	Weak transcription	Fetal Heart	heart
20	chr6:35312800-35318000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:35312800-35326800	Weak transcription	Fetal Brain Male	brain
22	chr6:35312800-35327400	Strong transcription	Fetal Stomach	stomach
23	chr6:35313000-35317400	Strong transcription	NH-A	brain
24	chr6:35313000-35317600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:35313000-35317800	Strong transcription	Left Ventricle	heart
26	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
27	chr6:35313200-35317400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:35313200-35317400	Strong transcription	Thymus	Thymus
29	chr6:35313200-35317600	Strong transcription	NHLF	lung
30	chr6:35313200-35318000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr6:35313200-35318200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:35313200-35320400	Weak transcription	Fetal Kidney	kidney
33	chr6:35313400-35317400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:35313400-35317400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr6:35313400-35317400	Strong transcription	Stomach Smooth Muscle	stomach
36	chr6:35313400-35317600	Strong transcription	Osteobl	bone
37	chr6:35313600-35317400	Strong transcription	Brain Hippocampus Middle	brain
38	chr6:35313800-35317400	Strong transcription	HepG2	liver
39	chr6:35313800-35325200	Strong transcription	Liver	Liver
40	chr6:35314000-35317600	Strong transcription	Fetal Lung	lung
41	chr6:35314000-35325800	Strong transcription	Adipose Nuclei	Adipose
42	chr6:35314200-35317400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:35314200-35317600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:35314200-35317600	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:35314200-35318200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr6:35314400-35317400	Strong transcription	Ovary	ovary
47	chr6:35314400-35322400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:35314600-35317400	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr6:35314600-35317600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr6:35314800-35317400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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