Variant report

Variant	rs73411747
Chromosome Location	chr6:35312668-35312669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35308697..35314051-chr6:35417510..35421585,8	K562	blood:
2	chr6:35308405..35313609-chr6:35434054..35440248,12	K562	blood:
3	chr6:35308378..35313609-chr6:35433550..35439145,12	K562	blood:
4	chr6:35310404..35313411-chr6:35381684..35386621,4	MCF-7	breast:
5	chr6:35311203..35312769-chr6:35313218..35316156,2	K562	blood:
6	chr6:35223638..35227228-chr6:35311300..35313480,3	K562	blood:
7	chr6:35312327..35314525-chr6:35320583..35322844,2	K562	blood:
8	chr6:35310112..35312932-chr6:35464368..35466518,2	K562	blood:
9	chr6:35309118..35313462-chr6:35418133..35422102,7	MCF-7	breast:
10	chr6:35311343..35313343-chr6:35379052..35381672,2	MCF-7	breast:
11	chr6:35309215..35314259-chr6:35432456..35439068,10	MCF-7	breast:
12	chr6:35310869..35315599-chr6:35463091..35467750,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112039	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000007866	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13362808	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2284197	0.94[ASN][1000 genomes]
rs34474204	0.93[EUR][1000 genomes]
rs57060566	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58114880	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59654131	0.93[EUR][1000 genomes]
rs61280851	0.93[EUR][1000 genomes]
rs61333739	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457813	0.94[ASN][1000 genomes]
rs6915410	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6939017	0.93[EUR][1000 genomes]
rs7744392	0.93[EUR][1000 genomes]
rs7758272	0.93[EUR][1000 genomes]
rs7771323	0.89[EUR][1000 genomes]
rs9470016	0.95[ASN][1000 genomes]
rs9658061	0.93[EUR][1000 genomes]
rs9658067	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9658080	0.93[EUR][1000 genomes]
rs9658125	0.95[ASN][1000 genomes]
rs9942488	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9942501	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35309800-35312800	Active TSS	GM12878-XiMat	blood
2	chr6:35311000-35312800	Flanking Active TSS	Brain Hippocampus Middle	brain
3	chr6:35311200-35313200	Enhancers	Spleen	Spleen
4	chr6:35311400-35314200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:35311400-35314400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:35311400-35314600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:35311400-35316200	Weak transcription	Pancreas	Pancrea
8	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:35311600-35312800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:35311600-35312800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:35311600-35312800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:35311600-35312800	Enhancers	Fetal Brain Male	brain
15	chr6:35311600-35314600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:35311600-35316000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:35311600-35316200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:35311600-35320400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:35311600-35327600	Weak transcription	A549	lung
22	chr6:35311800-35312800	Enhancers	Brain Angular Gyrus	brain
23	chr6:35311800-35312800	Enhancers	Esophagus	oesophagus
24	chr6:35311800-35312800	Enhancers	Gastric	stomach
25	chr6:35311800-35313000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr6:35311800-35313000	Enhancers	Colon Smooth Muscle	Colon
27	chr6:35311800-35313000	Enhancers	Lung	lung
28	chr6:35311800-35313000	Enhancers	HepG2	liver
29	chr6:35311800-35313200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:35311800-35314000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:35311800-35314000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:35311800-35314600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:35311800-35314800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:35311800-35316600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:35311800-35318400	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr6:35311800-35320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:35311800-35324000	Weak transcription	Right Atrium	heart
38	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
39	chr6:35312000-35313000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:35312000-35313400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:35312000-35313400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:35312000-35314000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:35312000-35314000	Weak transcription	Colonic Mucosa	Colon
44	chr6:35312000-35314000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:35312000-35315800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:35312000-35318400	Genic enhancers	Primary B cells from peripheral blood	blood
47	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
48	chr6:35312200-35312800	Enhancers	Fetal Thymus	thymus
49	chr6:35312200-35312800	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr6:35312200-35313000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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