Variant report

Variant	rs9942501
Chromosome Location	chr6:35324514-35324515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35324260..35326770-chr6:35333364..35334972,2	K562	blood:
2	chr6:35322678..35326427-chr6:35328080..35332051,5	K562	blood:
3	chr6:35322565..35324918-chr6:35326260..35328073,2	K562	blood:
4	chr6:35324260..35327105-chr6:35332379..35334972,3	K562	blood:
5	chr6:35322565..35326076-chr6:35326260..35332051,7	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13362808	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2284197	0.94[ASN][1000 genomes]
rs34474204	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57060566	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58114880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59654131	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61280851	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61333739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457813	0.94[ASN][1000 genomes]
rs6915410	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6939017	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73411747	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744392	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7758272	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7771323	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9470016	0.95[ASN][1000 genomes]
rs9658061	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9658067	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9658080	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9658125	0.95[ASN][1000 genomes]
rs9942488	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv885798	chr6:35318784-35329406	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:35311600-35327600	Weak transcription	A549	lung
3	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
4	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
5	chr6:35312200-35326400	Weak transcription	Fetal Brain Female	brain
6	chr6:35312600-35324600	Weak transcription	Brain Germinal Matrix	brain
7	chr6:35312600-35324800	Weak transcription	Fetal Heart	heart
8	chr6:35312800-35326800	Weak transcription	Fetal Brain Male	brain
9	chr6:35312800-35327400	Strong transcription	Fetal Stomach	stomach
10	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
11	chr6:35313800-35325200	Strong transcription	Liver	Liver
12	chr6:35314000-35325800	Strong transcription	Adipose Nuclei	Adipose
13	chr6:35314800-35325600	Strong transcription	Placenta	Placenta
14	chr6:35314800-35327000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:35315000-35325600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:35315200-35326800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:35316000-35328600	Strong transcription	Duodenum Mucosa	Duodenum
18	chr6:35316600-35324800	Strong transcription	Fetal Muscle Leg	muscle
19	chr6:35316800-35326800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:35316800-35327000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:35316800-35327200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr6:35316800-35330000	Strong transcription	Fetal Intestine Small	intestine
23	chr6:35317400-35324800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:35317400-35333000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:35319000-35325200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr6:35319000-35325800	Strong transcription	Fetal Lung	lung
27	chr6:35319000-35326000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr6:35319000-35326600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:35319200-35325000	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:35319200-35325000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:35319200-35325200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:35319200-35325200	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:35319200-35325200	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:35319200-35325400	Strong transcription	Dnd41	blood
35	chr6:35319200-35326000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:35319200-35326400	Strong transcription	Fetal Intestine Large	intestine
37	chr6:35319200-35326400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr6:35319200-35329000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:35319400-35325000	Strong transcription	Thymus	Thymus
40	chr6:35319400-35327200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:35319600-35325000	Strong transcription	Fetal Thymus	thymus
42	chr6:35319600-35325800	Strong transcription	Primary T cells from cord blood	blood
43	chr6:35319600-35325800	Strong transcription	Lung	lung
44	chr6:35319600-35327200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:35319600-35327600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:35320200-35325200	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr6:35320400-35325000	Strong transcription	HMEC	breast
48	chr6:35320400-35325000	Strong transcription	K562	blood
49	chr6:35320400-35326000	Strong transcription	HSMMtube	muscle
50	chr6:35320400-35326200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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