Variant report

Variant	rs57060566
Chromosome Location	chr6:35294776-35294777
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35292774..35294864-chr6:35417358..35419230,2	K562	blood:
2	chr6:35284674..35291745-chr6:35293396..35296911,9	MCF-7	breast:
3	chr6:35288465..35291006-chr6:35293846..35295520,2	K562	blood:
4	chr6:35293412..35294915-chr6:35298854..35300425,2	K562	blood:

Variant related genes	Relation type
ENSG00000023892	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13362808	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2284197	0.88[ASN][1000 genomes]
rs34474204	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs58114880	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59654131	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61280851	0.89[EUR][1000 genomes]
rs61333739	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457813	0.88[ASN][1000 genomes]
rs6915410	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6939017	0.89[EUR][1000 genomes]
rs73411747	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7744392	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7758272	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7771323	0.86[EUR][1000 genomes]
rs9470016	0.89[ASN][1000 genomes]
rs9658061	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9658067	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9658080	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9658125	0.89[ASN][1000 genomes]
rs9942488	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9942501	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
2	chr6:35286800-35294800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:35286800-35295000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:35286800-35295000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:35286800-35295200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:35286800-35295200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:35286800-35299800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:35286800-35299800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:35287600-35295000	Weak transcription	HepG2	liver
10	chr6:35287800-35295200	Weak transcription	Fetal Intestine Large	intestine
11	chr6:35287800-35295200	Weak transcription	Pancreas	Pancrea
12	chr6:35289400-35295200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:35289600-35295200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:35289600-35299800	Weak transcription	Esophagus	oesophagus
15	chr6:35290200-35299800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:35290400-35295200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:35290400-35296600	Weak transcription	NHEK	skin
18	chr6:35290400-35299400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:35290600-35295200	Weak transcription	Placenta	Placenta
20	chr6:35290800-35294800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:35290800-35295200	Weak transcription	GM12878-XiMat	blood
22	chr6:35291000-35295200	Weak transcription	Fetal Intestine Small	intestine
23	chr6:35291200-35299800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:35291400-35294800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:35291400-35300000	Weak transcription	Spleen	Spleen
26	chr6:35291600-35294800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:35291600-35309600	Weak transcription	Dnd41	blood
28	chr6:35292800-35294800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:35292800-35295800	Weak transcription	Thymus	Thymus
30	chr6:35293000-35294800	Weak transcription	Primary T cells from cord blood	blood
31	chr6:35293000-35294800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr6:35293200-35294800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:35293200-35294800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:35293200-35300000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:35293200-35309600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:35293400-35294800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr6:35293400-35294800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr6:35293400-35294800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:35293400-35294800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:35293400-35295000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:35293400-35295000	Weak transcription	Primary B cells from cord blood	blood
42	chr6:35293400-35295000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:35293400-35295400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:35293400-35299800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:35293600-35294800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:35293600-35294800	Weak transcription	Fetal Thymus	thymus
47	chr6:35293600-35295000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:35293600-35295000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:35293600-35295800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr6:35293600-35298000	Weak transcription	Primary monocytes fromperipheralblood	blood

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