Variant report

Variant	nsv602907
Chromosome Location	chr6:35285720-35312267
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1412)
CpG islands
(count:916)
Chromatin interactive
region (count:60)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1412 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:35310022-35310377	K562	blood:	n/a	n/a
2	ARID3A	chr6:35311192-35311640	K562	blood:	n/a	n/a
3	ARID3A	chr6:35310015-35310345	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:35286036-35286912	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:35311293-35311426	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:35295304-35295555	K562	blood:	n/a	n/a
7	ARID3A	chr6:35295243-35295569	HepG2	liver:	n/a	n/a
8	ATF1	chr6:35311216-35311645	K562	blood:	n/a	n/a
9	ATF1	chr6:35310030-35310482	K562	blood:	n/a	chr6:35310299-35310313
10	ATF2	chr6:35310041-35310386	GM12878	blood:	n/a	chr6:35310299-35310313 chr6:35310301-35310312
11	ATF2	chr6:35309993-35310472	H1-hESC	embryonic stem cell:	n/a	chr6:35310299-35310313 chr6:35310301-35310312
12	ATF2	chr6:35309937-35310428	GM12878	blood:	n/a	chr6:35310299-35310313 chr6:35310301-35310312
13	ATF3	chr6:35295922-35296156	K562	blood:	n/a	n/a
14	ATF3	chr6:35310964-35311632	K562	blood:	n/a	n/a
15	BACH1	chr6:35286175-35286284	H1-hESC	embryonic stem cell:	n/a	n/a
16	BACH1	chr6:35286500-35286569	H1-hESC	embryonic stem cell:	n/a	n/a
17	BACH1	chr6:35310073-35310271	H1-hESC	embryonic stem cell:	n/a	n/a
18	BCLAF1	chr6:35309919-35310446	GM12878	blood:	n/a	chr6:35310289-35310302 chr6:35310350-35310363 chr6:35310348-35310361 chr6:35310251-35310264
19	BCLAF1	chr6:35309931-35310351	GM12878	blood:	n/a	chr6:35310289-35310302 chr6:35310251-35310264
20	BHLHE40	chr6:35309846-35310475	GM12878	blood:	n/a	chr6:35310348-35310364 chr6:35310350-35310366 chr6:35310161-35310177
21	BHLHE40	chr6:35309982-35310469	HepG2	liver:	n/a	chr6:35310348-35310364 chr6:35310350-35310366 chr6:35310161-35310177
22	BHLHE40	chr6:35311200-35311347	HepG2	liver:	n/a	n/a
23	BHLHE40	chr6:35295268-35295525	HepG2	liver:	n/a	n/a
24	BHLHE40	chr6:35310939-35311762	K562	blood:	n/a	n/a
25	BHLHE40	chr6:35309861-35310486	K562	blood:	n/a	chr6:35310348-35310364 chr6:35310350-35310366 chr6:35310161-35310177
26	BHLHE40	chr6:35295274-35295485	K562	blood:	n/a	n/a
27	BHLHE40	chr6:35296001-35296147	K562	blood:	n/a	n/a
28	BRCA1	chr6:35286523-35286723	H1-hESC	embryonic stem cell:	n/a	n/a
29	BRCA1	chr6:35310066-35310282	HepG2	liver:	n/a	n/a
30	BRCA1	chr6:35310090-35310260	H1-hESC	embryonic stem cell:	n/a	n/a
31	BRCA1	chr6:35285916-35286158	H1-hESC	embryonic stem cell:	n/a	n/a
32	BRCA1	chr6:35310007-35310483	Hela-S3	cervix:	n/a	n/a
33	BRCA1	chr6:35286115-35286401	Hela-S3	cervix:	n/a	n/a
34	CBX3	chr6:35295252-35295631	K562	blood:	n/a	n/a
35	CBX3	chr6:35295828-35296225	K562	blood:	n/a	n/a
36	CBX3	chr6:35309839-35310566	K562	blood:	n/a	n/a
37	CBX3	chr6:35295783-35296253	K562	blood:	n/a	n/a
38	CCNT2	chr6:35286023-35286207	K562	blood:	n/a	n/a
39	CCNT2	chr6:35311168-35311800	K562	blood:	n/a	chr6:35311306-35311315
40	CCNT2	chr6:35310030-35310707	K562	blood:	n/a	n/a
41	CEBPB	chr6:35309269-35309613	Hela-S3	cervix:	n/a	chr6:35309428-35309439
42	CEBPB	chr6:35309134-35310543	ECC-1	luminal epithelium:	n/a	chr6:35309428-35309439
43	CEBPB	chr6:35309830-35310199	H1-hESC	embryonic stem cell:	n/a	n/a
44	CEBPB	chr6:35309245-35309589	K562	blood:	n/a	chr6:35309428-35309439
45	CEBPB	chr6:35309026-35310530	HCT-116	colon:	n/a	chr6:35309428-35309439
46	CEBPB	chr6:35309283-35310400	MCF-7	breast:	n/a	chr6:35309428-35309439
47	CEBPB	chr6:35286052-35286568	Hela-S3	cervix:	n/a	n/a
48	CEBPB	chr6:35311057-35311651	K562	blood:	n/a	n/a
49	CEBPB	chr6:35309334-35309479	HepG2	liver:	n/a	chr6:35309428-35309439
50	CEBPB	chr6:35311257-35311544	Hela-S3	cervix:	n/a	n/a

(count:916 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:35309867-35309917	BJ	skin:	n/a
2	chr6:35309867-35309917	BJ	skin:	n/a
3	chr6:35286315-35286365	HAEpiC	amniotic membrane:	n/a
4	chr6:35310257-35310307	MCF10A-Er-Src	breast:	n/a
5	chr6:35309928-35309978	Hela-S3	cervix:	n/a
6	chr6:35286315-35286365	ProgFib	skin:	n/a
7	chr6:35285967-35286017	ECC-1	luminal epithelium:	n/a
8	chr6:35310257-35310307	SAEC	small airway:	n/a
9	chr6:35286360-35286410	HAEpiC	amniotic membrane:	n/a
10	chr6:35310123-35310173	AG04449	skin:	fetal
11	chr6:35309867-35309917	A549	lung:	n/a
12	chr6:35310257-35310307	HIPEpiC	eye:	n/a
13	chr6:35311534-35311584	MCF10A-Er-Src	breast:	n/a
14	chr6:35286360-35286410	BE2_C	brain:	n/a
15	chr6:35309867-35309917	CMK	blood:	n/a
16	chr6:35310257-35310307	HEK293	kidney:	embryo
17	chr6:35310123-35310173	HCM	heart:	n/a
18	chr6:35309867-35309917	Jurkat	blood:	n/a
19	chr6:35310685-35310735	HCT-116	colon:	n/a
20	chr6:35310542-35310592	LNCaP	prostate:	n/a
21	chr6:35285967-35286017	ProgFib	skin:	n/a
22	chr6:35285967-35286017	AG09319	gingival:	n/a
23	chr6:35310264-35310314	SKMC	muscle:	n/a
24	chr6:35286315-35286365	HMEC	breast:	n/a
25	chr6:35310264-35310314	HPAEpiC	pulmonary alveolar:	n/a
26	chr6:35285967-35286017	BE2_C	brain:	n/a
27	chr6:35310542-35310592	AG09319	gingival:	n/a
28	chr6:35310274-35310324	AG04450	lung:	fetal
29	chr6:35310542-35310592	CMK	blood:	n/a
30	chr6:35286315-35286365	A549	lung:	n/a
31	chr6:35306837-35306887	HCF	heart:	n/a
32	chr6:35285967-35286017	HAEpiC	amniotic membrane:	n/a
33	chr6:35311534-35311584	AoSMC	blood vessel:	n/a
34	chr6:35306837-35306887	PrEC	prostate:	n/a
35	chr6:35310542-35310592	BE2_C	brain:	n/a
36	chr6:35310260-35310310	SK-N-SH_RA	brain:	n/a
37	chr6:35310123-35310173	NHDF-neo	bronchial:	n/a
38	chr6:35309928-35309978	A549	lung:	n/a
39	chr6:35289475-35289525	GM12891	blood:	n/a
40	chr6:35310274-35310324	ovcar-3	ovarian:	n/a
41	chr6:35310542-35310592	MCF-7	breast:	n/a
42	chr6:35310542-35310592	NT2-D1	testis:	n/a
43	chr6:35309928-35309978	RPTEC	kidney:	n/a
44	chr6:35285967-35286017	AG10803	skin:	n/a
45	chr6:35310685-35310735	SK-N-SH_RA	brain:	n/a
46	chr6:35286315-35286365	HPAEpiC	pulmonary alveolar:	n/a
47	chr6:35310123-35310173	MCF10A-Er-Src	breast:	n/a
48	chr6:35310123-35310173	AoSMC	blood vessel:	n/a
49	chr6:35310685-35310735	RPTEC	kidney:	n/a
50	chr6:35306837-35306887	AoSMC	blood vessel:	n/a

(count:60 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:35285224..35287896-chr6:35288768..35291223,2	MCF-7	breast:
2	chr6:35265043..35266008-chr6:35294939..35295502,5	K562	blood:
3	chr6:35288465..35291006-chr6:35293846..35295520,2	K562	blood:
4	chr6:35288465..35291006-chr6:35293846..35295520,2	K562	blood:
5	chr6:35295332..35295913-chr6:35435598..35436498,2	K562	blood:
6	chr6:35285639..35286428-chr6:35294982..35295885,2	MCF-7	breast:
7	chr6:35309722..35310228-chr6:35360820..35361514,2	K562	blood:
8	chr6:35265055..35265714-chr6:35294846..35295833,3	MCF-7	breast:
9	chr15:45003255..45004064-chr6:35309943..35310848,2	Hela-S3	cervix:
10	chr6:35267234..35269262-chr6:35289191..35290827,2	K562	blood:
11	chr6:35309118..35313462-chr6:35418133..35422102,7	MCF-7	breast:
12	chr6:35299795..35300338-chr6:35417088..35417923,2	MCF-7	breast:
13	chr6:35310112..35312932-chr6:35464368..35466518,2	K562	blood:
14	chr6:35265198..35265903-chr6:35309667..35310572,2	MCF-7	breast:
15	chr6:35293412..35294915-chr6:35298854..35300425,2	K562	blood:
16	chr6:35285909..35286480-chr6:35295083..35295908,2	MCF-7	breast:
17	chr6:35310116..35312027-chr6:35462385..35465150,2	MCF-7	breast:
18	chr6:35283250..35286184-chr6:35288120..35289623,2	MCF-7	breast:
19	chr6:35310114..35311915-chr6:35462651..35465491,3	MCF-7	breast:
20	chr6:35293412..35294915-chr6:35298854..35300425,2	K562	blood:
21	chr6:35264990..35266116-chr6:35294974..35295672,7	MCF-7	breast:
22	chr6:35279156..35280875-chr6:35287560..35289237,2	MCF-7	breast:
23	chr6:35311343..35313343-chr6:35379052..35381672,2	MCF-7	breast:
24	chr6:35310869..35315599-chr6:35463091..35467750,4	K562	blood:
25	chr6:35308378..35313609-chr6:35433550..35439145,12	K562	blood:
26	chr6:35261866..35262452-chr6:35295314..35295831,2	MCF-7	breast:
27	chr6:35310404..35313411-chr6:35381684..35386621,4	MCF-7	breast:
28	chr6:35284608..35286901-chr6:35310270..35311991,2	MCF-7	breast:
29	chr6:35286799..35289883-chr6:35433916..35436639,3	K562	blood:
30	chr6:35262066..35263146-chr6:35295128..35295915,3	K562	blood:
31	chr6:35307588..35310210-chr6:35369138..35372365,3	K562	blood:
32	chr6:35296500..35298532-chr6:35435569..35437774,2	MCF-7	breast:
33	chr6:35311203..35312769-chr6:35313218..35316156,2	K562	blood:
34	chr6:35295337..35295887-chr6:35309706..35310409,2	MCF-7	breast:
35	chr6:35288573..35291494-chr6:35419132..35420962,2	K562	blood:
36	chr6:35285639..35286428-chr6:35294982..35295885,2	MCF-7	breast:
37	chr6:35285529..35287519-chr6:35436021..35437585,2	MCF-7	breast:
38	chr6:35292774..35294864-chr6:35417358..35419230,2	K562	blood:
39	chr6:35310058..35310620-chr6:35464293..35465068,2	K562	blood:
40	chr6:35284608..35286901-chr6:35310270..35311991,2	MCF-7	breast:
41	chr6:35295220..35295970-chr6:35435567..35436421,2	MCF-7	breast:
42	chr6:35225346..35227530-chr6:35309507..35311733,2	MCF-7	breast:
43	chr6:35308697..35314051-chr6:35417510..35421585,8	K562	blood:
44	chr6:35285909..35286480-chr6:35295083..35295908,2	MCF-7	breast:
45	chr6:35309667..35310668-chr6:35435356..35436547,17	K562	blood:
46	chr6:35309662..35310600-chr6:35435587..35436198,4	MCF-7	breast:
47	chr6:35294980..35297541-chr6:35307436..35310108,3	K562	blood:
48	chr6:35261055..35266113-chr6:35308586..35312212,6	K562	blood:
49	chr6:35284900..35287281-chr6:35294919..35297134,2	MCF-7	breast:
50	chr6:35289938..35291662-chr6:35465459..35467668,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TEAD3-5	chr6:35286571-35286928	ucscGeneNc_uc003oke_2

No data

Variant related genes	Relation type
PPARD	TF binding region
PPARD	CpG island
ENSG00000229474	chromatin interactions
ENSG00000198755	chromatin interactions
ENSG00000065029	chromatin interactions
ENSG00000112039	chromatin interactions
ENSG00000007866	chromatin interactions
ENSG00000023892	chromatin interactions
ENSG00000112033	chromatin interactions
ENSG00000166710	chromatin interactions

Extended variants
information (count: 909 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:909 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2395617	chr6:35285720-35285721	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs200354771	chr6:35285772-35285773	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs115047813	chr6:35285780-35285781	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs565693045	chr6:35285795-35285796	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs368563247	chr6:35285802-35285803	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs371476728	chr6:35285837-35285838	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs187579304	chr6:35285856-35285857	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs377491397	chr6:35285903-35285904	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs543586313	chr6:35285904-35285905	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs369157582	chr6:35285940-35285941	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs200654355	chr6:35285959-35285960	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs191948544	chr6:35286023-35286024	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs541285645	chr6:35286024-35286025	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs17856543	chr6:35286042-35286043	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs61748597	chr6:35286075-35286076	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs529668369	chr6:35286109-35286110	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs540279988	chr6:35286155-35286156	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs34036896	chr6:35286204-35286205	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs369891491	chr6:35286276-35286277	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs6899744	chr6:35286295-35286296	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs150278765	chr6:35286333-35286334	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs375891873	chr6:35286358-35286359	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs549580604	chr6:35286410-35286411	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs370491039	chr6:35286477-35286478	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs530615186	chr6:35286502-35286503	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs552017797	chr6:35286577-35286578	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
27	rs571786942	chr6:35286583-35286584	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
28	rs532603711	chr6:35286689-35286690	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
29	rs183001693	chr6:35286732-35286733	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
30	rs536587367	chr6:35286786-35286787	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
31	rs554525622	chr6:35286844-35286845	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
32	rs569978119	chr6:35286860-35286861	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
33	rs116666828	chr6:35286969-35286970	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs571926372	chr6:35286984-35286985	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs558799032	chr6:35287076-35287077	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs186625574	chr6:35287095-35287096	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs541231429	chr6:35287126-35287127	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs553252764	chr6:35287179-35287180	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs375528462	chr6:35287198-35287199	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs574776555	chr6:35287226-35287227	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs3213573	chr6:35287247-35287248	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs138942316	chr6:35287274-35287275	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs371600214	chr6:35287284-35287285	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs200310320	chr6:35287292-35287293	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs138908911	chr6:35287309-35287310	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs372748704	chr6:35287340-35287341	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs575156362	chr6:35287351-35287352	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs545840832	chr6:35287353-35287354	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs374346504	chr6:35287387-35287388	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs368446360	chr6:35287406-35287407	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
small cell lung cancer	17426248	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Glioblastoma multiforme	21510904	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1128 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35276000-35293800	Weak transcription	K562	blood
2	chr6:35280800-35293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:35281000-35285800	Weak transcription	NHEK	skin
4	chr6:35281600-35291600	Strong transcription	Primary B cells from peripheral blood	blood
5	chr6:35282000-35293400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:35282000-35293600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:35282000-35293800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:35282200-35293600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:35282600-35293600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:35282800-35293600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:35283400-35293400	Strong transcription	Primary B cells from cord blood	blood
12	chr6:35283800-35293400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:35284000-35285800	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:35284000-35291600	Strong transcription	Dnd41	blood
15	chr6:35284000-35293000	Strong transcription	Primary T cells from cord blood	blood
16	chr6:35284000-35293400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:35284200-35286000	Strong transcription	Primary hematopoietic stem cells	blood
18	chr6:35284200-35290800	Strong transcription	GM12878-XiMat	blood
19	chr6:35284200-35293400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:35284400-35292800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:35284400-35293600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:35284800-35290600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:35285200-35286000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:35285200-35286000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
25	chr6:35285200-35286000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
26	chr6:35285200-35286600	Active TSS	Brain Anterior Caudate	brain
27	chr6:35285200-35286800	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr6:35285200-35286800	Active TSS	A549	lung
29	chr6:35285200-35290800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:35285200-35292800	Strong transcription	Thymus	Thymus
31	chr6:35285400-35285800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:35285400-35285800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
33	chr6:35285400-35285800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:35285400-35285800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
35	chr6:35285400-35285800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
36	chr6:35285400-35285800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:35285400-35285800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:35285400-35285800	Enhancers	Liver	Liver
39	chr6:35285400-35285800	Flanking Active TSS	Brain Cingulate Gyrus	brain
40	chr6:35285400-35285800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr6:35285400-35285800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:35285400-35285800	Flanking Active TSS	Fetal Heart	heart
43	chr6:35285400-35285800	Enhancers	Gastric	stomach
44	chr6:35285400-35285800	Flanking Active TSS	HepG2	liver
45	chr6:35285400-35286000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
46	chr6:35285400-35286000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr6:35285400-35286000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
48	chr6:35285400-35286000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
49	chr6:35285400-35286000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
50	chr6:35285400-35286000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain

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