Variant report

Variant	rs541285645
Chromosome Location	chr6:35286024-35286025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35275753..35280306-chr6:35283312..35286403,4	MCF-7	breast:
2	chr6:35285639..35286428-chr6:35294982..35295885,2	MCF-7	breast:
3	chr6:35284608..35286901-chr6:35310270..35311991,2	MCF-7	breast:
4	chr6:35285529..35287519-chr6:35436021..35437585,2	MCF-7	breast:
5	chr6:35285909..35286480-chr6:35295083..35295908,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000023892	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
4	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35276000-35293800	Weak transcription	K562	blood
2	chr6:35280800-35293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:35281600-35291600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:35282000-35293400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:35282000-35293600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:35282000-35293800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:35282200-35293600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:35282600-35293600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:35282800-35293600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:35283400-35293400	Strong transcription	Primary B cells from cord blood	blood
11	chr6:35283800-35293400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:35284000-35291600	Strong transcription	Dnd41	blood
13	chr6:35284000-35293000	Strong transcription	Primary T cells from cord blood	blood
14	chr6:35284000-35293400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:35284200-35290800	Strong transcription	GM12878-XiMat	blood
16	chr6:35284200-35293400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:35284400-35292800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:35284400-35293600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:35284800-35290600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:35285200-35286600	Active TSS	Brain Anterior Caudate	brain
21	chr6:35285200-35286800	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr6:35285200-35286800	Active TSS	A549	lung
23	chr6:35285200-35290800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:35285200-35292800	Strong transcription	Thymus	Thymus
25	chr6:35285400-35286200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:35285400-35286600	Active TSS	Brain Angular Gyrus	brain
27	chr6:35285400-35286600	Active TSS	Brain Hippocampus Middle	brain
28	chr6:35285400-35286600	Active TSS	Colon Smooth Muscle	Colon
29	chr6:35285400-35286800	Genic enhancers	Primary T cells fromperipheralblood	blood
30	chr6:35285400-35286800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:35285400-35286800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:35285400-35286800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr6:35285400-35289200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:35285400-35289800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:35285400-35293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr6:35285600-35286200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:35285600-35286200	Flanking Active TSS	Placenta Amnion	Placenta Amnion
38	chr6:35285600-35286200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
39	chr6:35285600-35286400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:35285600-35286400	Active TSS	Osteobl	bone
41	chr6:35285600-35286600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:35285600-35286600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:35285600-35286600	Bivalent Enhancer	Fetal Brain Male	brain
44	chr6:35285600-35286600	Active TSS	Psoas Muscle	Psoas
45	chr6:35285600-35286800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
46	chr6:35285600-35286800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:35285600-35286800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr6:35285600-35286800	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr6:35285600-35286800	Flanking Active TSS	Colonic Mucosa	Colon
50	chr6:35285600-35286800	Active TSS	Pancreatic Islets	Pancreatic Islet

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