Variant report

Variant	rs571926372
Chromosome Location	chr6:35286984-35286985
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35285529..35287519-chr6:35436021..35437585,2	MCF-7	breast:
2	chr6:35286799..35289883-chr6:35433916..35436639,3	K562	blood:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
4	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35276000-35293800	Weak transcription	K562	blood
2	chr6:35280800-35293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:35281600-35291600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:35282000-35293400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:35282000-35293600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:35282000-35293800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:35282200-35293600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:35282600-35293600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:35282800-35293600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:35283400-35293400	Strong transcription	Primary B cells from cord blood	blood
11	chr6:35283800-35293400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:35284000-35291600	Strong transcription	Dnd41	blood
13	chr6:35284000-35293000	Strong transcription	Primary T cells from cord blood	blood
14	chr6:35284000-35293400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:35284200-35290800	Strong transcription	GM12878-XiMat	blood
16	chr6:35284200-35293400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:35284400-35292800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:35284400-35293600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:35284800-35290600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:35285200-35290800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:35285200-35292800	Strong transcription	Thymus	Thymus
22	chr6:35285400-35289200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:35285400-35289800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:35285400-35293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:35285600-35287000	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
26	chr6:35285600-35291400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:35285800-35287000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:35285800-35293000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:35286000-35287000	Active TSS	NHDF-Ad	bronchial
30	chr6:35286000-35287400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr6:35286000-35293600	Strong transcription	Fetal Thymus	thymus
32	chr6:35286200-35288600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:35286400-35287000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:35286400-35287400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:35286400-35287600	Genic enhancers	Spleen	Spleen
36	chr6:35286600-35287000	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr6:35286600-35287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:35286600-35287200	Weak transcription	Esophagus	oesophagus
39	chr6:35286600-35287400	Weak transcription	Lung	lung
40	chr6:35286600-35290200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
42	chr6:35286800-35287000	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr6:35286800-35287000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:35286800-35287000	Active TSS	Muscle Satellite Cultured Cells	--
45	chr6:35286800-35287000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:35286800-35287000	Enhancers	Adipose Nuclei	Adipose
47	chr6:35286800-35287000	Enhancers	Brain Anterior Caudate	brain
48	chr6:35286800-35287000	Enhancers	Brain Substantia Nigra	brain
49	chr6:35286800-35287000	Enhancers	Fetal Intestine Small	intestine
50	chr6:35286800-35287000	Enhancers	Skeletal Muscle Male	skeletal muscle

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