Variant report

Variant	rs3213573
Chromosome Location	chr6:35287247-35287248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35285529..35287519-chr6:35436021..35437585,2	MCF-7	breast:
2	chr6:35286799..35289883-chr6:35433916..35436639,3	K562	blood:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1053046	1.00[JPT][hapmap]
rs12183693	0.92[ASN][1000 genomes]
rs16876156	1.00[EUR][1000 genomes]
rs17847863	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17847869	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45532239	1.00[EUR][1000 genomes]
rs45571538	1.00[EUR][1000 genomes]
rs45600543	1.00[EUR][1000 genomes]
rs6457813	1.00[JPT][hapmap]
rs6457816	1.00[JPT][hapmap]
rs6900530	1.00[JPT][hapmap]
rs6901410	1.00[JPT][hapmap]
rs6902123	1.00[JPT][hapmap]
rs6906237	1.00[JPT][hapmap]
rs6919334	1.00[JPT][hapmap]
rs6922548	1.00[JPT][hapmap]
rs707969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7739752	1.00[JPT][hapmap]
rs7746988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9296148	1.00[JPT][hapmap]
rs9296154	1.00[JPT][hapmap]
rs9470001	1.00[JPT][hapmap]
rs9470007	1.00[JPT][hapmap]
rs9658083	1.00[JPT][hapmap]
rs9658100	1.00[JPT][hapmap]
rs9658125	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
4	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35276000-35293800	Weak transcription	K562	blood
2	chr6:35280800-35293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:35281600-35291600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:35282000-35293400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:35282000-35293600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:35282000-35293800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:35282200-35293600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:35282600-35293600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:35282800-35293600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:35283400-35293400	Strong transcription	Primary B cells from cord blood	blood
11	chr6:35283800-35293400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:35284000-35291600	Strong transcription	Dnd41	blood
13	chr6:35284000-35293000	Strong transcription	Primary T cells from cord blood	blood
14	chr6:35284000-35293400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:35284200-35290800	Strong transcription	GM12878-XiMat	blood
16	chr6:35284200-35293400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:35284400-35292800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:35284400-35293600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:35284800-35290600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:35285200-35290800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:35285200-35292800	Strong transcription	Thymus	Thymus
22	chr6:35285400-35289200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:35285400-35289800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:35285400-35293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:35285600-35291400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:35285800-35293000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:35286000-35287400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:35286000-35293600	Strong transcription	Fetal Thymus	thymus
29	chr6:35286200-35288600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:35286400-35287400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:35286400-35287600	Genic enhancers	Spleen	Spleen
32	chr6:35286600-35287400	Weak transcription	Lung	lung
33	chr6:35286600-35290200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
35	chr6:35286800-35287400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:35286800-35287400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:35286800-35287400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:35286800-35287400	Enhancers	Fetal Brain Female	brain
39	chr6:35286800-35287400	Weak transcription	Fetal Stomach	stomach
40	chr6:35286800-35287400	Enhancers	Pancreas	Pancrea
41	chr6:35286800-35287400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr6:35286800-35287400	Weak transcription	HMEC	breast
43	chr6:35286800-35287600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:35286800-35287600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:35286800-35287800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:35286800-35287800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:35286800-35287800	Enhancers	Liver	Liver
48	chr6:35286800-35287800	Enhancers	Fetal Intestine Large	intestine
49	chr6:35286800-35287800	Enhancers	Stomach Mucosa	stomach
50	chr6:35286800-35288400	Weak transcription	Ovary	ovary

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