Variant report

Variant	rs7771474
Chromosome Location	chr6:35320447-35320448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11961212	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11962717	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966736	1.00[CEU][hapmap]
rs61116413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61748597	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6457813	0.87[YRI][hapmap]
rs6457821	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6899744	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911817	1.00[CEU][hapmap]
rs6919734	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6920146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934583	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937510	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407660	1.00[AMR][1000 genomes]
rs73407664	1.00[AMR][1000 genomes]
rs73407680	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409740	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411714	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411722	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411755	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411771	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411784	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411790	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750906	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761870	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7762809	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7765510	1.00[CEU][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9658134	1.00[CEU][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv885798	chr6:35318784-35329406	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:35311600-35327600	Weak transcription	A549	lung
7	chr6:35311800-35320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:35311800-35324000	Weak transcription	Right Atrium	heart
9	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
10	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
11	chr6:35312200-35326400	Weak transcription	Fetal Brain Female	brain
12	chr6:35312600-35324600	Weak transcription	Brain Germinal Matrix	brain
13	chr6:35312600-35324800	Weak transcription	Fetal Heart	heart
14	chr6:35312800-35326800	Weak transcription	Fetal Brain Male	brain
15	chr6:35312800-35327400	Strong transcription	Fetal Stomach	stomach
16	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
17	chr6:35313800-35325200	Strong transcription	Liver	Liver
18	chr6:35314000-35325800	Strong transcription	Adipose Nuclei	Adipose
19	chr6:35314400-35322400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:35314800-35322200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:35314800-35322200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:35314800-35325600	Strong transcription	Placenta	Placenta
23	chr6:35314800-35327000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:35315000-35325600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:35315200-35323800	Weak transcription	Brain Angular Gyrus	brain
26	chr6:35315200-35326800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:35316000-35328600	Strong transcription	Duodenum Mucosa	Duodenum
28	chr6:35316600-35320600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:35316600-35323200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:35316600-35324800	Strong transcription	Fetal Muscle Leg	muscle
31	chr6:35316800-35320800	Genic enhancers	Primary T cells fromperipheralblood	blood
32	chr6:35316800-35323800	Weak transcription	Pancreas	Pancrea
33	chr6:35316800-35324000	Weak transcription	Aorta	Aorta
34	chr6:35316800-35326800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:35316800-35327000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:35316800-35327200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr6:35316800-35330000	Strong transcription	Fetal Intestine Small	intestine
38	chr6:35317400-35320600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:35317400-35320600	Weak transcription	NH-A	brain
40	chr6:35317400-35323000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:35317400-35323800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:35317400-35323800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr6:35317400-35324800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr6:35317400-35333000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:35317600-35320600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:35317600-35323800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:35317800-35320600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:35318800-35322000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:35318800-35322600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr6:35319000-35320800	Genic enhancers	Primary T helper cells fromperipheralblood	blood

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