Variant report

Variant	rs6919734
Chromosome Location	chr6:35311988-35311989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35308697..35314051-chr6:35417510..35421585,8	K562	blood:
2	chr6:35308405..35313609-chr6:35434054..35440248,12	K562	blood:
3	chr6:35308378..35313609-chr6:35433550..35439145,12	K562	blood:
4	chr6:35310404..35313411-chr6:35381684..35386621,4	MCF-7	breast:
5	chr6:35310116..35312027-chr6:35462385..35465150,2	MCF-7	breast:
6	chr6:35311203..35312769-chr6:35313218..35316156,2	K562	blood:
7	chr6:35223638..35227228-chr6:35311300..35313480,3	K562	blood:
8	chr6:35284608..35286901-chr6:35310270..35311991,2	MCF-7	breast:
9	chr6:35310112..35312932-chr6:35464368..35466518,2	K562	blood:
10	chr6:35309118..35313462-chr6:35418133..35422102,7	MCF-7	breast:
11	chr6:35311343..35313343-chr6:35379052..35381672,2	MCF-7	breast:
12	chr6:35309215..35314259-chr6:35432456..35439068,10	MCF-7	breast:
13	chr6:35310869..35315599-chr6:35463091..35467750,4	K562	blood:
14	chr6:35261055..35266113-chr6:35308586..35312212,6	K562	blood:
15	chr6:35309852..35312289-chr6:35417832..35421264,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000007866	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11961212	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11966736	1.00[CEU][hapmap]
rs16876572	0.89[ASW][hapmap]
rs6457821	0.89[ASW][hapmap];1.00[CEU][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs6911817	1.00[CEU][hapmap]
rs6920146	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6937510	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7750906	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7761870	1.00[CEU][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs7762809	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes]
rs7765510	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs7771474	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9658134	1.00[CEU][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35309800-35312800	Active TSS	GM12878-XiMat	blood
2	chr6:35310000-35312000	Active TSS	HSMM	muscle
3	chr6:35310200-35312000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:35310400-35312000	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr6:35310400-35312000	Active TSS	Placenta	Placenta
6	chr6:35310400-35312000	Active TSS	NHDF-Ad	bronchial
7	chr6:35310400-35312000	Active TSS	NHLF	lung
8	chr6:35310600-35312000	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr6:35310600-35312200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr6:35310600-35312600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:35310800-35312000	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr6:35310800-35312000	Flanking Active TSS	Fetal Heart	heart
13	chr6:35310800-35312000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
14	chr6:35310800-35312000	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr6:35310800-35312200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr6:35310800-35312200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr6:35310800-35312200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:35310800-35312200	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr6:35310800-35312200	Flanking Active TSS	Liver	Liver
20	chr6:35310800-35312200	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr6:35310800-35312200	Flanking Active TSS	HUVEC	blood vessel
22	chr6:35310800-35312200	Flanking Active TSS	NH-A	brain
23	chr6:35310800-35312400	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr6:35310800-35312400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr6:35310800-35312600	Flanking Active TSS	Right Ventricle	heart
26	chr6:35311000-35312000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:35311000-35312200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:35311000-35312200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr6:35311000-35312200	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr6:35311000-35312600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:35311000-35312600	Flanking Active TSS	Brain Substantia Nigra	brain
32	chr6:35311000-35312800	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr6:35311200-35312000	Flanking Active TSS	NHEK	skin
34	chr6:35311200-35312400	Flanking Active TSS	HMEC	breast
35	chr6:35311200-35313200	Enhancers	Spleen	Spleen
36	chr6:35311400-35312000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:35311400-35312000	Enhancers	Stomach Mucosa	stomach
38	chr6:35311400-35312200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
39	chr6:35311400-35312400	Weak transcription	Small Intestine	intestine
40	chr6:35311400-35314200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:35311400-35314400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr6:35311400-35314600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:35311400-35316200	Weak transcription	Pancreas	Pancrea
44	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr6:35311600-35312000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:35311600-35312000	Active TSS	Fetal Kidney	kidney
49	chr6:35311600-35312000	Active TSS	Fetal Lung	lung
50	chr6:35311600-35312000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood

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