Variant report

Variant	rs7761870
Chromosome Location	chr6:35423886-35423887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35415085..35416689-chr6:35421187..35424185,2	K562	blood:
2	chr6:35415818..35424678-chr6:35432486..35440672,36	K562	blood:
3	chr6:35423795..35426623-chr6:35465037..35468781,3	K562	blood:
4	chr6:35418617..35424875-chr6:35434196..35438070,12	MCF-7	breast:
5	chr6:35423275..35426107-chr6:35428625..35431307,2	MCF-7	breast:
6	chr6:35258451..35260687-chr6:35421514..35424141,3	MCF-7	breast:
7	chr6:35262981..35267829-chr6:35418945..35424124,7	K562	blood:
8	chr6:35417485..35421526-chr6:35423771..35426864,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000023892	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11961212	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11966736	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6457821	1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs6911817	1.00[CEU][hapmap]
rs6919734	1.00[CEU][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs6920146	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6937510	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs73413742	1.00[EUR][1000 genomes]
rs7750906	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7762809	1.00[CEU][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7765510	1.00[CEU][hapmap]
rs7771474	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9658134	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
4	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
6	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
7	nsv981135	chr6:35423548-35424152	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35421000-35427200	Weak transcription	Thymus	Thymus
2	chr6:35421000-35435400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:35421200-35425200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:35421200-35425600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:35421200-35425600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:35421200-35426200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:35421200-35435200	Weak transcription	Brain Angular Gyrus	brain
8	chr6:35421200-35435400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:35421400-35424000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:35421400-35424600	Weak transcription	Primary T cells from cord blood	blood
11	chr6:35421400-35424600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:35421400-35424600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:35421400-35425200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:35421400-35425600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:35421400-35425800	Weak transcription	Brain Substantia Nigra	brain
16	chr6:35421400-35435400	Weak transcription	Colonic Mucosa	Colon
17	chr6:35421400-35435400	Weak transcription	Fetal Kidney	kidney
18	chr6:35421400-35435400	Weak transcription	Pancreas	Pancrea
19	chr6:35421600-35424800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:35421600-35427200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:35421600-35433800	Weak transcription	HUVEC	blood vessel
22	chr6:35421600-35435200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:35421600-35435200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:35421600-35435400	Weak transcription	A549	lung
25	chr6:35421600-35435400	Weak transcription	NH-A	brain
26	chr6:35421800-35431000	Weak transcription	Liver	Liver
27	chr6:35422000-35424000	Enhancers	Psoas Muscle	Psoas
28	chr6:35422000-35425400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:35422000-35427000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:35422000-35430200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:35422200-35435200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:35422200-35435400	Weak transcription	Small Intestine	intestine
33	chr6:35422400-35426000	Weak transcription	NHLF	lung
34	chr6:35422400-35427000	Weak transcription	GM12878-XiMat	blood
35	chr6:35422400-35430200	Weak transcription	HSMM	muscle
36	chr6:35422400-35434800	Strong transcription	Fetal Intestine Small	intestine
37	chr6:35422600-35427600	Strong transcription	HepG2	liver
38	chr6:35422600-35429200	Strong transcription	Dnd41	blood
39	chr6:35422600-35435400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr6:35422800-35424000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:35422800-35425200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:35422800-35425200	Strong transcription	K562	blood
43	chr6:35422800-35425400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr6:35422800-35425800	Weak transcription	Adipose Nuclei	Adipose
45	chr6:35422800-35426000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr6:35422800-35426800	Weak transcription	Osteobl	bone
47	chr6:35422800-35427000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr6:35422800-35427000	Weak transcription	HSMMtube	muscle
49	chr6:35422800-35427200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:35422800-35431000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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