Variant report

Variant	rs6937510
Chromosome Location	chr6:35320811-35320812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35319838..35321444-chr6:35336659..35338777,2	K562	blood:
2	chr6:35319034..35321264-chr6:35325609..35328038,2	MCF-7	breast:
3	chr6:35319334..35322299-chr6:35325979..35329998,4	MCF-7	breast:
4	chr6:35312327..35314525-chr6:35320583..35322844,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11961212	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11962717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966736	1.00[CEU][hapmap]
rs61116413	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61748597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6457813	0.87[YRI][hapmap]
rs6457821	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6899744	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911817	1.00[CEU][hapmap]
rs6919734	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6920146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934246	1.00[EUR][1000 genomes]
rs6934583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407614	1.00[EUR][1000 genomes]
rs73407643	0.83[EUR][1000 genomes]
rs73407647	1.00[EUR][1000 genomes]
rs73407660	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407664	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407680	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409740	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750906	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761870	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7762809	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7765510	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7771474	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9658134	1.00[CEU][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv885798	chr6:35318784-35329406	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:35311600-35327600	Weak transcription	A549	lung
6	chr6:35311800-35324000	Weak transcription	Right Atrium	heart
7	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
8	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
9	chr6:35312200-35326400	Weak transcription	Fetal Brain Female	brain
10	chr6:35312600-35324600	Weak transcription	Brain Germinal Matrix	brain
11	chr6:35312600-35324800	Weak transcription	Fetal Heart	heart
12	chr6:35312800-35326800	Weak transcription	Fetal Brain Male	brain
13	chr6:35312800-35327400	Strong transcription	Fetal Stomach	stomach
14	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
15	chr6:35313800-35325200	Strong transcription	Liver	Liver
16	chr6:35314000-35325800	Strong transcription	Adipose Nuclei	Adipose
17	chr6:35314400-35322400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:35314800-35322200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:35314800-35322200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:35314800-35325600	Strong transcription	Placenta	Placenta
21	chr6:35314800-35327000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:35315000-35325600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:35315200-35323800	Weak transcription	Brain Angular Gyrus	brain
24	chr6:35315200-35326800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:35316000-35328600	Strong transcription	Duodenum Mucosa	Duodenum
26	chr6:35316600-35323200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:35316600-35324800	Strong transcription	Fetal Muscle Leg	muscle
28	chr6:35316800-35323800	Weak transcription	Pancreas	Pancrea
29	chr6:35316800-35324000	Weak transcription	Aorta	Aorta
30	chr6:35316800-35326800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:35316800-35327000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:35316800-35327200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:35316800-35330000	Strong transcription	Fetal Intestine Small	intestine
34	chr6:35317400-35323000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:35317400-35323800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:35317400-35323800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:35317400-35324800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:35317400-35333000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:35317600-35323800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:35318800-35322000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:35318800-35322600	Strong transcription	Primary B cells from peripheral blood	blood
42	chr6:35319000-35321800	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:35319000-35322200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:35319000-35325200	Strong transcription	Fetal Muscle Trunk	muscle
45	chr6:35319000-35325800	Strong transcription	Fetal Lung	lung
46	chr6:35319000-35326000	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr6:35319000-35326600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:35319200-35321800	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr6:35319200-35322000	Strong transcription	Brain Hippocampus Middle	brain
50	chr6:35319200-35322200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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