Variant report

Variant	rs73407680
Chromosome Location	chr6:35226052-35226053
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35225346..35227530-chr6:35309507..35311733,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961212	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11962717	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61116413	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61748597	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899744	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920146	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934246	1.00[EUR][1000 genomes]
rs6934583	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937510	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407614	1.00[EUR][1000 genomes]
rs73407643	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73407647	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73407660	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407664	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411714	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411722	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411769	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411771	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411784	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411790	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750906	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7765510	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35199600-35226600	Weak transcription	Esophagus	oesophagus
2	chr6:35199800-35226200	Weak transcription	Pancreas	Pancrea
3	chr6:35201400-35226200	Weak transcription	Stomach Mucosa	stomach
4	chr6:35207400-35226200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:35209800-35226400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:35213200-35226200	Weak transcription	Gastric	stomach
7	chr6:35214400-35226600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:35214600-35226200	Weak transcription	Aorta	Aorta
9	chr6:35217400-35226400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:35217600-35226200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:35217800-35226200	Weak transcription	Psoas Muscle	Psoas
12	chr6:35218000-35226600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:35218800-35226200	Weak transcription	Brain Substantia Nigra	brain
14	chr6:35218800-35226200	Weak transcription	Lung	lung
15	chr6:35218800-35226200	Weak transcription	Spleen	Spleen
16	chr6:35220200-35226200	Weak transcription	Primary T cells from cord blood	blood
17	chr6:35221200-35226200	Weak transcription	Left Ventricle	heart
18	chr6:35225000-35226200	Enhancers	Fetal Brain Male	brain
19	chr6:35225000-35226200	Enhancers	Rectal Smooth Muscle	rectum
20	chr6:35225000-35226600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr6:35225200-35226200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:35225200-35226600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:35225400-35226200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:35225400-35226200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:35225400-35226200	Enhancers	K562	blood
26	chr6:35225400-35226400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr6:35225400-35228000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:35225600-35226200	Enhancers	Primary B cells from cord blood	blood
29	chr6:35225600-35226200	Enhancers	Fetal Kidney	kidney
30	chr6:35225800-35226200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr6:35225800-35226200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr6:35225800-35226200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr6:35225800-35226200	Enhancers	Fetal Intestine Large	intestine
34	chr6:35225800-35226200	Enhancers	Fetal Muscle Leg	muscle
35	chr6:35225800-35226200	Enhancers	Fetal Stomach	stomach
36	chr6:35225800-35226200	Enhancers	Fetal Thymus	thymus
37	chr6:35225800-35226400	Enhancers	Primary T cells fromperipheralblood	blood
38	chr6:35225800-35226400	Flanking Active TSS	HepG2	liver
39	chr6:35225800-35226600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:35226000-35226200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:35226000-35226200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:35226000-35226200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:35226000-35226200	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr6:35226000-35226200	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr6:35226000-35226200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:35226000-35226200	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr6:35226000-35226200	Enhancers	Adipose Nuclei	Adipose
48	chr6:35226000-35226200	Enhancers	Brain Angular Gyrus	brain
49	chr6:35226000-35226200	Enhancers	Fetal Intestine Small	intestine
50	chr6:35226000-35226200	Weak transcription	Fetal Muscle Trunk	muscle

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