Variant report

Variant	rs73411722
Chromosome Location	chr6:35296056-35296057
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35284674..35291745-chr6:35293396..35296911,9	MCF-7	breast:
2	chr6:35294980..35297541-chr6:35307436..35310108,3	K562	blood:
3	chr6:35284900..35287281-chr6:35294919..35297134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000023892	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11961212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61116413	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61748597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6457814	1.00[ASN][1000 genomes]
rs6899744	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934246	1.00[EUR][1000 genomes]
rs6934583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407614	1.00[EUR][1000 genomes]
rs73407643	0.83[EUR][1000 genomes]
rs73407647	1.00[EUR][1000 genomes]
rs73407660	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407664	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407680	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409740	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413704	1.00[ASN][1000 genomes]
rs7750906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
2	chr6:35286800-35299800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:35286800-35299800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:35289600-35299800	Weak transcription	Esophagus	oesophagus
5	chr6:35290200-35299800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:35290400-35296600	Weak transcription	NHEK	skin
7	chr6:35290400-35299400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:35291200-35299800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:35291400-35300000	Weak transcription	Spleen	Spleen
10	chr6:35291600-35309600	Weak transcription	Dnd41	blood
11	chr6:35293200-35300000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:35293200-35309600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:35293400-35299800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:35293600-35298000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:35294800-35296200	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr6:35294800-35296200	Genic enhancers	Fetal Thymus	thymus
17	chr6:35295000-35296200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:35295400-35296200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:35295400-35296600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:35295400-35297800	Weak transcription	Hela-S3	cervix
21	chr6:35295400-35299800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:35295600-35296200	Strong transcription	Primary B cells from cord blood	blood
23	chr6:35295600-35299800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:35295600-35299800	Weak transcription	Placenta	Placenta
25	chr6:35295800-35296200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:35295800-35296200	ZNF genes & repeats	Thymus	Thymus
27	chr6:35295800-35296400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:35295800-35296400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:35295800-35296400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr6:35295800-35297800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:35295800-35298600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:35295800-35299600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:35295800-35299800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr6:35295800-35299800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr6:35296000-35296200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:35296000-35296200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:35296000-35297400	Weak transcription	HepG2	liver
38	chr6:35296000-35299800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:35296000-35299800	Weak transcription	Primary T cells from cord blood	blood
40	chr6:35296000-35299800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:35296000-35299800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:35296000-35300800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr6:35296000-35303000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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