Variant report

Variant	rs73407647
Chromosome Location	chr6:35171200-35171201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35131417..35136766-chr6:35169545..35174762,6	MCF-7	breast:
2	chr6:35169302..35171245-chr6:35179554..35182344,2	K562	blood:
3	chr6:35147410..35151273-chr6:35169982..35172318,3	MCF-7	breast:
4	chr6:35170890..35173888-chr6:35185679..35187377,2	K562	blood:
5	chr6:35165622..35167133-chr6:35170794..35173161,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146197	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961212	1.00[EUR][1000 genomes]
rs11962717	1.00[EUR][1000 genomes]
rs61116413	1.00[EUR][1000 genomes]
rs61748597	1.00[EUR][1000 genomes]
rs6899744	1.00[EUR][1000 genomes]
rs6920146	1.00[EUR][1000 genomes]
rs6934246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934583	1.00[EUR][1000 genomes]
rs6937510	1.00[EUR][1000 genomes]
rs73407614	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73407660	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73407664	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73407680	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73409740	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73411714	1.00[EUR][1000 genomes]
rs73411722	1.00[EUR][1000 genomes]
rs73411755	1.00[EUR][1000 genomes]
rs73411769	1.00[EUR][1000 genomes]
rs73411771	1.00[EUR][1000 genomes]
rs73411784	1.00[EUR][1000 genomes]
rs73411790	1.00[EUR][1000 genomes]
rs7750906	1.00[EUR][1000 genomes]
rs7765510	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35163200-35171200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:35165200-35171200	Weak transcription	NH-A	brain
3	chr6:35167600-35171600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:35168000-35171200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:35168200-35176200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:35169200-35171400	Enhancers	Fetal Heart	heart
7	chr6:35169400-35171800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:35169400-35171800	Enhancers	Right Ventricle	heart
9	chr6:35169400-35172800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:35169600-35172600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:35169600-35174200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:35169600-35174600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:35169800-35171200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:35169800-35171800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:35169800-35171800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:35169800-35171800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr6:35169800-35171800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:35169800-35171800	Enhancers	Brain Substantia Nigra	brain
19	chr6:35169800-35171800	Enhancers	Right Atrium	heart
20	chr6:35169800-35173000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:35169800-35175000	Enhancers	Osteobl	bone
22	chr6:35170000-35171800	Enhancers	Brain Angular Gyrus	brain
23	chr6:35170000-35171800	Enhancers	Brain Anterior Caudate	brain
24	chr6:35170000-35171800	Enhancers	Brain Cingulate Gyrus	brain
25	chr6:35170000-35171800	Enhancers	Brain Hippocampus Middle	brain
26	chr6:35170200-35171800	Enhancers	Liver	Liver
27	chr6:35170200-35174600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:35170400-35171600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:35170800-35172800	Enhancers	NHDF-Ad	bronchial
30	chr6:35171000-35171600	Enhancers	Adipose Nuclei	Adipose
31	chr6:35171000-35171800	Enhancers	Left Ventricle	heart
32	chr6:35171000-35174000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:35171200-35171400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:35171200-35171400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
35	chr6:35171200-35171400	Enhancers	A549	lung
36	chr6:35171200-35171800	Enhancers	NH-A	brain
37	chr6:35171200-35172800	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links