Variant report

Variant	rs73411769
Chromosome Location	chr6:35329545-35329546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35322565..35326076-chr6:35326260..35332051,7	K562	blood:
2	chr6:35328832..35330634-chr6:35333716..35335607,2	K562	blood:
3	chr6:35315105..35319537-chr6:35325978..35330834,4	K562	blood:
4	chr6:35329439..35333357-chr6:35335770..35342563,9	K562	blood:
5	chr6:35329516..35331357-chr6:35414817..35417634,2	MCF-7	breast:
6	chr6:35313773..35316682-chr6:35327162..35330055,2	MCF-7	breast:
7	chr6:35328136..35331103-chr6:35385311..35387478,2	MCF-7	breast:
8	chr6:35319334..35322299-chr6:35325979..35329998,4	MCF-7	breast:
9	chr6:35328087..35330643-chr6:35436119..35437805,2	MCF-7	breast:
10	chr6:35322678..35326427-chr6:35328080..35332051,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11961212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61116413	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61748597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6457814	1.00[ASN][1000 genomes]
rs6899744	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934246	1.00[EUR][1000 genomes]
rs6934583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407614	1.00[EUR][1000 genomes]
rs73407643	0.83[EUR][1000 genomes]
rs73407647	1.00[EUR][1000 genomes]
rs73407660	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407664	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407680	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409740	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413704	1.00[ASN][1000 genomes]
rs7750906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
2	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
3	chr6:35316800-35330000	Strong transcription	Fetal Intestine Small	intestine
4	chr6:35317400-35333000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:35321000-35342400	Weak transcription	Fetal Kidney	kidney
6	chr6:35321400-35330400	Weak transcription	Colonic Mucosa	Colon
7	chr6:35322000-35336000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:35322200-35331600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:35323800-35331600	Enhancers	Psoas Muscle	Psoas
10	chr6:35324800-35331400	Enhancers	Brain Hippocampus Middle	brain
11	chr6:35325000-35329600	Enhancers	Brain Cingulate Gyrus	brain
12	chr6:35325000-35330200	Weak transcription	GM12878-XiMat	blood
13	chr6:35325000-35330600	Weak transcription	HUVEC	blood vessel
14	chr6:35325000-35331000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:35325000-35331400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:35325000-35331600	Enhancers	Left Ventricle	heart
17	chr6:35325200-35330200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:35325200-35335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:35325400-35331200	Enhancers	Right Ventricle	heart
20	chr6:35325400-35335600	Weak transcription	Dnd41	blood
21	chr6:35325600-35330600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:35325600-35332000	Genic enhancers	Placenta	Placenta
23	chr6:35325800-35331400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:35326000-35330400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr6:35326000-35332000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:35326200-35330000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:35326200-35331600	Enhancers	Fetal Thymus	thymus
28	chr6:35326400-35335600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:35326600-35329600	Enhancers	Pancreas	Pancrea
30	chr6:35326800-35331400	Enhancers	Brain Anterior Caudate	brain
31	chr6:35326800-35331600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:35326800-35331600	Enhancers	Fetal Muscle Trunk	muscle
33	chr6:35327000-35329600	Enhancers	Liver	Liver
34	chr6:35327000-35330200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:35327000-35336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:35327200-35330400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:35327400-35329600	Enhancers	H1 Cell Line	embryonic stem cell
38	chr6:35327400-35330600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:35327600-35330600	Enhancers	HSMMtube	muscle
40	chr6:35327600-35335800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:35327800-35329600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:35327800-35331600	Enhancers	Fetal Muscle Leg	muscle
43	chr6:35328000-35330000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr6:35328000-35330000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:35328000-35330400	Weak transcription	Thymus	Thymus
46	chr6:35328400-35330000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:35328400-35330200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:35328400-35331000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:35328400-35331000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr6:35328400-35332200	Enhancers	Fetal Heart	heart

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