Variant report

Variant	rs6457814
Chromosome Location	chr6:35317603-35317604
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35315105..35319537-chr6:35325978..35330834,4	K562	blood:
2	chr6:35310212..35313058-chr6:35313527..35317832,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11961212	1.00[ASN][1000 genomes]
rs59756313	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6457813	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6900530	0.92[EUR][1000 genomes]
rs6934583	1.00[ASN][1000 genomes]
rs73411722	1.00[ASN][1000 genomes]
rs73411769	1.00[ASN][1000 genomes]
rs73411784	1.00[ASN][1000 genomes]
rs73411790	1.00[ASN][1000 genomes]
rs73411802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750906	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	esv3364254	chr6:35317357-35317658	Strong transcription Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:35311600-35320400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:35311600-35327600	Weak transcription	A549	lung
8	chr6:35311800-35318400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:35311800-35320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:35311800-35324000	Weak transcription	Right Atrium	heart
11	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
12	chr6:35312000-35318400	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
14	chr6:35312200-35318200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:35312200-35326400	Weak transcription	Fetal Brain Female	brain
16	chr6:35312600-35324600	Weak transcription	Brain Germinal Matrix	brain
17	chr6:35312600-35324800	Weak transcription	Fetal Heart	heart
18	chr6:35312800-35318000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:35312800-35326800	Weak transcription	Fetal Brain Male	brain
20	chr6:35312800-35327400	Strong transcription	Fetal Stomach	stomach
21	chr6:35313000-35317800	Strong transcription	Left Ventricle	heart
22	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
23	chr6:35313200-35318000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:35313200-35318200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:35313200-35320400	Weak transcription	Fetal Kidney	kidney
26	chr6:35313800-35325200	Strong transcription	Liver	Liver
27	chr6:35314000-35325800	Strong transcription	Adipose Nuclei	Adipose
28	chr6:35314200-35318200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr6:35314400-35322400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:35314800-35317800	Strong transcription	Lung	lung
31	chr6:35314800-35318200	Strong transcription	HSMMtube	muscle
32	chr6:35314800-35322200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:35314800-35322200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:35314800-35325600	Strong transcription	Placenta	Placenta
35	chr6:35314800-35327000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:35315000-35319200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr6:35315000-35319400	Weak transcription	Colonic Mucosa	Colon
38	chr6:35315000-35325600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:35315200-35317800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:35315200-35319200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:35315200-35319200	Weak transcription	HMEC	breast
42	chr6:35315200-35319200	Weak transcription	HSMM	muscle
43	chr6:35315200-35323800	Weak transcription	Brain Angular Gyrus	brain
44	chr6:35315200-35326800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:35315400-35317800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:35315400-35319200	Weak transcription	Brain Anterior Caudate	brain
47	chr6:35315600-35318000	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:35316000-35328600	Strong transcription	Duodenum Mucosa	Duodenum
49	chr6:35316200-35319000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:35316400-35317800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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