Variant report

Variant	rs73407664
Chromosome Location	chr6:35198117-35198118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35182418..35185303-chr6:35197191..35199627,2	MCF-7	breast:
2	chr6:35195991..35200691-chr6:35207151..35212650,5	K562	blood:
3	chr6:35129806..35132792-chr6:35197170..35199424,2	MCF-7	breast:
4	chr6:35196232..35199243-chr6:35200230..35204307,5	K562	blood:
5	chr6:35182919..35187135-chr6:35197439..35201271,4	K562	blood:
6	chr6:35195154..35200305-chr6:35202213..35207133,5	K562	blood:
7	chr6:35192773..35195560-chr6:35195988..35198811,2	MCF-7	breast:
8	chr6:35189954..35192837-chr6:35197811..35199507,2	K562	blood:
9	chr6:35191178..35195234-chr6:35198102..35200512,4	K562	blood:
10	chr6:35196748..35200110-chr6:35208798..35212197,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272374	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11961212	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11962717	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61116413	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61748597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899744	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920146	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934246	1.00[EUR][1000 genomes]
rs6934583	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937510	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407614	1.00[EUR][1000 genomes]
rs73407643	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73407647	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73407660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407670	0.84[AFR][1000 genomes]
rs73407680	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411714	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411722	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411755	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411769	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411771	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411784	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411790	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750906	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7765510	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35182400-35209000	Weak transcription	A549	lung
2	chr6:35182600-35198600	Weak transcription	Gastric	stomach
3	chr6:35183200-35198800	Weak transcription	Ovary	ovary
4	chr6:35184800-35205600	Weak transcription	Fetal Brain Female	brain
5	chr6:35185400-35198800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:35185800-35198400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:35186200-35202800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:35186400-35212000	Weak transcription	NHDF-Ad	bronchial
9	chr6:35186600-35198200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:35186600-35204600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:35186600-35205400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:35186800-35212000	Weak transcription	Dnd41	blood
13	chr6:35187400-35198400	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:35187600-35198400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:35188000-35198400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:35188000-35198600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:35188000-35199400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:35188200-35200400	Genic enhancers	Osteobl	bone
19	chr6:35188200-35205800	Weak transcription	Fetal Kidney	kidney
20	chr6:35188200-35206400	Weak transcription	NH-A	brain
21	chr6:35188400-35199600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:35189200-35200000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:35189600-35205800	Weak transcription	Brain Germinal Matrix	brain
24	chr6:35190000-35205600	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:35190200-35212000	Weak transcription	Brain Angular Gyrus	brain
26	chr6:35190600-35201800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:35191200-35212000	Weak transcription	Primary T cells from cord blood	blood
28	chr6:35191400-35198400	Weak transcription	Brain Substantia Nigra	brain
29	chr6:35191400-35226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:35192200-35211400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:35192600-35198400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:35193400-35198400	Weak transcription	Brain Anterior Caudate	brain
33	chr6:35193800-35198200	Weak transcription	Liver	Liver
34	chr6:35194000-35201400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:35194000-35209400	Weak transcription	Thymus	Thymus
36	chr6:35194000-35225600	Weak transcription	Primary B cells from cord blood	blood
37	chr6:35194200-35202600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:35194800-35198400	Strong transcription	Fetal Stomach	stomach
39	chr6:35194800-35202800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:35195000-35198800	Weak transcription	Pancreas	Pancrea
41	chr6:35195200-35198800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:35195400-35198400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:35195600-35199400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:35195600-35210600	Weak transcription	Spleen	Spleen
45	chr6:35195800-35198600	Weak transcription	Aorta	Aorta
46	chr6:35195800-35199200	Weak transcription	Hela-S3	cervix
47	chr6:35195800-35202400	Weak transcription	Fetal Intestine Small	intestine
48	chr6:35196600-35198400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:35196600-35198400	Weak transcription	Lung	lung
50	chr6:35197000-35205600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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