Variant report

Variant	rs16876572
Chromosome Location	chr6:35434273-35434274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:35434144-35434280	Hela-S3	cervix:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35308405..35313609-chr6:35434054..35440248,12	K562	blood:
2	chr6:35260730..35269335-chr6:35433870..35444063,22	MCF-7	breast:
3	chr6:35308378..35313609-chr6:35433550..35439145,12	K562	blood:
4	chr6:35309215..35314259-chr6:35432456..35439068,10	MCF-7	breast:
5	chr6:35432131..35435121-chr6:35435197..35437523,2	K562	blood:
6	chr6:35227094..35229802-chr6:35433183..35436613,4	K562	blood:
7	chr6:35418617..35424875-chr6:35434196..35438070,12	MCF-7	breast:
8	chr6:35257372..35267692-chr6:35433856..35438688,25	K562	blood:
9	chr6:35415818..35424678-chr6:35432486..35440672,36	K562	blood:
10	chr6:35433822..35437754-chr6:35703135..35706478,6	K562	blood:
11	chr6:35257372..35267871-chr6:35433266..35439192,25	K562	blood:

No data

Variant related genes	Relation type
RPL10A	TF binding region
ENSG00000065029	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000157343	Chromatin interaction
ENSG00000232909	Chromatin interaction
ENSG00000112033	Chromatin interaction
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11545923	1.00[CHD][hapmap]
rs11962317	1.00[CEU][hapmap]
rs11966402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873902	1.00[CHD][hapmap]
rs16874216	1.00[CHD][hapmap]
rs16878591	1.00[CHD][hapmap]
rs16878806	1.00[CHD][hapmap]
rs16879378	1.00[CHD][hapmap]
rs17511800	1.00[CHD][hapmap]
rs41270066	0.85[AFR][1000 genomes]
rs45558531	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6457815	1.00[CHD][hapmap]
rs6457823	1.00[CEU][hapmap]
rs6457824	1.00[CEU][hapmap]
rs6919734	0.89[ASW][hapmap]
rs6926662	1.00[CEU][hapmap]
rs6927367	1.00[CEU][hapmap]
rs73415611	0.98[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73415612	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs743965	1.00[CHD][hapmap]
rs7751726	1.00[CHD][hapmap]
rs7762809	0.89[ASW][hapmap]
rs7770619	1.00[CHD][hapmap]
rs9462088	0.82[CEU][hapmap]
rs9470033	1.00[CEU][hapmap]
rs9658079	1.00[CHD][hapmap]
rs9658085	1.00[CHD][hapmap]
rs9658135	1.00[CHD][hapmap]
rs9658149	1.00[CHD][hapmap]
rs9658182	1.00[EUR][1000 genomes]
rs9942465	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
4	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
6	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
7	nsv969390	chr6:35428276-35434702	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
8	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35421000-35435400	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:35421200-35435200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:35421200-35435400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:35421400-35435400	Weak transcription	Colonic Mucosa	Colon
5	chr6:35421400-35435400	Weak transcription	Fetal Kidney	kidney
6	chr6:35421400-35435400	Weak transcription	Pancreas	Pancrea
7	chr6:35421600-35435200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:35421600-35435200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:35421600-35435400	Weak transcription	A549	lung
10	chr6:35421600-35435400	Weak transcription	NH-A	brain
11	chr6:35422200-35435200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:35422200-35435400	Weak transcription	Small Intestine	intestine
13	chr6:35422400-35434800	Strong transcription	Fetal Intestine Small	intestine
14	chr6:35422600-35435400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:35422800-35434800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:35422800-35434800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:35422800-35435200	Weak transcription	Fetal Thymus	thymus
18	chr6:35422800-35435400	Weak transcription	Fetal Brain Male	brain
19	chr6:35422800-35435600	Weak transcription	Right Atrium	heart
20	chr6:35423000-35435200	Weak transcription	Fetal Heart	heart
21	chr6:35423000-35435200	Strong transcription	Fetal Stomach	stomach
22	chr6:35423000-35435400	Weak transcription	NHDF-Ad	bronchial
23	chr6:35423200-35435200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:35423400-35434600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:35423400-35434800	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:35423400-35435200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:35423400-35435400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:35424000-35435600	Weak transcription	Psoas Muscle	Psoas
29	chr6:35424200-35435400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:35426600-35435400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:35427200-35435200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr6:35427400-35435400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:35427600-35435400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:35427600-35435400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr6:35427600-35435400	Weak transcription	Left Ventricle	heart
36	chr6:35427600-35435400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:35427800-35435200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:35427800-35435200	Weak transcription	Primary T cells from cord blood	blood
39	chr6:35427800-35435200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr6:35427800-35435400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:35427800-35435400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:35427800-35435400	Weak transcription	Osteobl	bone
43	chr6:35428000-35435200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr6:35428000-35435200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr6:35428000-35435400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:35428000-35435400	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:35428000-35435600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:35428000-35435600	Weak transcription	Gastric	stomach
49	chr6:35428400-35435200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:35428400-35435200	Strong transcription	Fetal Muscle Leg	muscle

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