Variant report

Variant	rs16873902
Chromosome Location	chr6:35235241-35235242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr6:35234955-35235807	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34857178..34858858-chr6:35234868..35237489,2	MCF-7	breast:
2	chr6:35235219..35237440-chr6:35250503..35252576,2	MCF-7	breast:

Variant related genes	Relation type
ZNF76	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12110520	1.00[CEU][hapmap]
rs12110664	1.00[CEU][hapmap]
rs12111424	1.00[CEU][hapmap]
rs16868695	1.00[CHD][hapmap]
rs16872293	1.00[CHD][hapmap]
rs16874216	1.00[CHD][hapmap]
rs16876572	1.00[CHD][hapmap]
rs17511800	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2004	1.00[CEU][hapmap]
rs2187903	1.00[CEU][hapmap]
rs34278260	1.00[AMR][1000 genomes]
rs41270062	1.00[AMR][1000 genomes]
rs56809926	1.00[AMR][1000 genomes]
rs57229653	1.00[AMR][1000 genomes]
rs61734578	1.00[AMR][1000 genomes]
rs6457815	1.00[CHD][hapmap]
rs6901580	1.00[CEU][hapmap]
rs6938138	1.00[CHD][hapmap]
rs73405759	1.00[AMR][1000 genomes]
rs73405768	1.00[AMR][1000 genomes]
rs73405774	1.00[AMR][1000 genomes]
rs73405795	1.00[AMR][1000 genomes]
rs73405799	1.00[AMR][1000 genomes]
rs73407650	1.00[AMR][1000 genomes]
rs73407675	1.00[AMR][1000 genomes]
rs73409769	1.00[AMR][1000 genomes]
rs73409778	1.00[AMR][1000 genomes]
rs73409793	1.00[AMR][1000 genomes]
rs73411706	1.00[AMR][1000 genomes]
rs73411720	1.00[AMR][1000 genomes]
rs73411726	1.00[AMR][1000 genomes]
rs73411781	1.00[AMR][1000 genomes]
rs73411797	1.00[AMR][1000 genomes]
rs743965	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs7751726	1.00[CHD][hapmap]
rs7770619	1.00[CHD][hapmap]
rs7771323	1.00[CEU][hapmap]
rs820102	1.00[CEU][hapmap]
rs9462064	1.00[CEU][hapmap]
rs9658079	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658085	1.00[CHD][hapmap]
rs9658129	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658135	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658149	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9942465	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228200-35243000	Weak transcription	Aorta	Aorta
2	chr6:35228400-35236000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:35228400-35247800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:35228400-35248000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:35228600-35237400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:35228600-35238000	Weak transcription	Fetal Stomach	stomach
8	chr6:35228600-35242000	Weak transcription	HSMMtube	muscle
9	chr6:35228600-35243000	Weak transcription	HSMM	muscle
10	chr6:35228600-35243000	Weak transcription	NH-A	brain
11	chr6:35228600-35248400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:35228600-35248800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:35228800-35238800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:35228800-35242400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:35228800-35242400	Weak transcription	NHEK	skin
17	chr6:35228800-35243200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:35228800-35244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:35228800-35248800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:35228800-35248800	Weak transcription	Spleen	Spleen
21	chr6:35228800-35249000	Weak transcription	Fetal Intestine Large	intestine
22	chr6:35228800-35249000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:35228800-35251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:35229000-35237600	Weak transcription	Fetal Intestine Small	intestine
25	chr6:35229000-35241800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:35229000-35242000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:35229000-35242400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:35229000-35243000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:35229000-35248800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:35229000-35248800	Weak transcription	Thymus	Thymus
31	chr6:35229000-35249000	Weak transcription	Liver	Liver
32	chr6:35229000-35250400	Weak transcription	Fetal Brain Male	brain
33	chr6:35229200-35238200	Weak transcription	Primary T cells from cord blood	blood
34	chr6:35229200-35243000	Weak transcription	Adipose Nuclei	Adipose
35	chr6:35229200-35246200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:35229200-35248800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:35229200-35248800	Weak transcription	Dnd41	blood
38	chr6:35229200-35250200	Weak transcription	Pancreas	Pancrea
39	chr6:35230200-35236400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr6:35230600-35242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:35230800-35235400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:35230800-35240600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:35230800-35241400	Weak transcription	NHLF	lung
44	chr6:35230800-35241800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:35230800-35242600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:35230800-35242800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:35231000-35240400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:35231000-35241600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:35231200-35243000	Weak transcription	Placenta	Placenta
50	chr6:35231200-35248400	Weak transcription	Primary T cells fromperipheralblood	blood

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