Variant report

Variant	rs34278260
Chromosome Location	chr6:35288696-35288697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35279156..35280875-chr6:35287560..35289237,2	MCF-7	breast:
2	chr6:35287361..35290011-chr6:35374509..35376732,2	K562	blood:
3	chr6:35288465..35291006-chr6:35293846..35295520,2	K562	blood:
4	chr6:35288573..35291494-chr6:35419132..35420962,2	K562	blood:
5	chr6:35286799..35289883-chr6:35433916..35436639,3	K562	blood:
6	chr6:35283250..35286184-chr6:35288120..35289623,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112039	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000023892	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1034450	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs1077822	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs16868695	1.00[ASN][1000 genomes]
rs16868699	1.00[ASN][1000 genomes]
rs16872293	1.00[ASN][1000 genomes]
rs16873902	1.00[AMR][1000 genomes]
rs16874216	1.00[ASN][1000 genomes]
rs17511800	1.00[AMR][1000 genomes]
rs2004	1.00[ASN][1000 genomes]
rs2187903	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2228265	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs2894400	1.00[ASN][1000 genomes]
rs41270046	1.00[ASN][1000 genomes]
rs41270062	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs56809926	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229653	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57468283	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57794912	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57856268	1.00[ASN][1000 genomes]
rs58796597	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59757151	1.00[ASN][1000 genomes]
rs59895076	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60086237	1.00[ASN][1000 genomes]
rs60113507	1.00[ASN][1000 genomes]
rs60569490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61592141	1.00[ASN][1000 genomes]
rs61734578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457817	1.00[ASN][1000 genomes]
rs6900879	1.00[ASN][1000 genomes]
rs6901580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6923025	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73403887	1.00[ASN][1000 genomes]
rs73405709	1.00[ASN][1000 genomes]
rs73405725	1.00[ASN][1000 genomes]
rs73405759	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73405774	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73405795	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73405799	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407641	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407650	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407675	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746425	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746430	1.00[ASN][1000 genomes]
rs743965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773319	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469960	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469967	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658079	1.00[AMR][1000 genomes]
rs9658127	1.00[ASN][1000 genomes]
rs9658129	1.00[AMR][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9658132	1.00[AMR][1000 genomes]
rs9658135	1.00[AMR][1000 genomes]
rs9658149	1.00[AMR][1000 genomes]
rs9658170	1.00[AMR][1000 genomes]
rs9942465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
4	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35276000-35293800	Weak transcription	K562	blood
2	chr6:35280800-35293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:35281600-35291600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:35282000-35293400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:35282000-35293600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:35282000-35293800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:35282200-35293600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:35282600-35293600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:35282800-35293600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:35283400-35293400	Strong transcription	Primary B cells from cord blood	blood
11	chr6:35283800-35293400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:35284000-35291600	Strong transcription	Dnd41	blood
13	chr6:35284000-35293000	Strong transcription	Primary T cells from cord blood	blood
14	chr6:35284000-35293400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:35284200-35290800	Strong transcription	GM12878-XiMat	blood
16	chr6:35284200-35293400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:35284400-35292800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:35284400-35293600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:35284800-35290600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:35285200-35290800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:35285200-35292800	Strong transcription	Thymus	Thymus
22	chr6:35285400-35289200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:35285400-35289800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:35285400-35293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:35285600-35291400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:35285800-35293000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:35286000-35293600	Strong transcription	Fetal Thymus	thymus
28	chr6:35286600-35290200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
30	chr6:35286800-35289000	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr6:35286800-35289200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:35286800-35290400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:35286800-35290400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:35286800-35290400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:35286800-35290600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:35286800-35290600	Strong transcription	Placenta	Placenta
37	chr6:35286800-35292200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:35286800-35292600	Weak transcription	Colonic Mucosa	Colon
39	chr6:35286800-35293400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:35286800-35294800	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:35286800-35295000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:35286800-35295000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:35286800-35295200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:35286800-35295200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr6:35286800-35299800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:35286800-35299800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:35287000-35288800	Weak transcription	Brain Anterior Caudate	brain
48	chr6:35287000-35289400	Weak transcription	Adipose Nuclei	Adipose
49	chr6:35287200-35290200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:35287200-35293200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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