Variant report

Variant	rs73746425
Chromosome Location	chr6:35413954-35413955
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35409416..35412723-chr6:35413939..35416621,5	K562	blood:
2	chr6:35413046..35416291-chr6:35417429..35420462,4	K562	blood:
3	chr6:35412651..35414194-chr6:35442637..35444257,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112039	Chromatin interaction
ENSG00000227154	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1034450	1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs1077822	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs16868695	1.00[ASN][1000 genomes]
rs16868699	1.00[ASN][1000 genomes]
rs16874216	1.00[ASN][1000 genomes]
rs2187903	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2228265	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs34278260	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270062	1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs57229653	1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57856268	1.00[ASN][1000 genomes]
rs59757151	1.00[ASN][1000 genomes]
rs59895076	1.00[ASN][1000 genomes]
rs60569490	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61592141	1.00[ASN][1000 genomes]
rs61734578	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457817	1.00[ASN][1000 genomes]
rs6901580	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73407675	1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409769	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409774	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409778	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409793	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411706	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411720	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411726	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411781	0.83[EUR][1000 genomes]
rs73411797	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746430	1.00[ASN][1000 genomes]
rs743965	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	1.00[ASN][1000 genomes]
rs9462064	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469960	1.00[ASN][1000 genomes]
rs9469967	1.00[ASN][1000 genomes]
rs9658127	1.00[ASN][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9942465	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
5	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
6	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
7	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
8	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35403400-35419400	Weak transcription	Right Atrium	heart
2	chr6:35406800-35419200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:35411200-35419600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:35411400-35415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:35411400-35419400	Weak transcription	NHEK	skin
6	chr6:35411600-35419400	Weak transcription	HMEC	breast
7	chr6:35411800-35419200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:35412800-35414000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:35413400-35414000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
10	chr6:35413400-35414000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:35413400-35414000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:35413400-35414000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:35413400-35414000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:35413400-35414200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:35413400-35414200	Enhancers	Placenta	Placenta
16	chr6:35413600-35414000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:35413600-35414000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:35413600-35414000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:35413600-35414000	Enhancers	Esophagus	oesophagus
20	chr6:35413600-35414200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:35413600-35414200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:35413600-35414200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:35413800-35414200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:35413800-35414200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:35413800-35414400	Enhancers	Gastric	stomach
26	chr6:35413800-35417000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:35413800-35417400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:35413800-35419400	Weak transcription	Pancreas	Pancrea

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