Variant report

Variant	rs61592141
Chromosome Location	chr6:35403373-35403374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35403150..35406143-chr6:35419979..35421585,2	MCF-7	breast:
2	chr6:35401564..35403389-chr6:35434322..35438039,3	K562	blood:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1034450	1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs1077822	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs16868695	1.00[ASN][1000 genomes]
rs16868699	1.00[ASN][1000 genomes]
rs16874216	1.00[ASN][1000 genomes]
rs2187903	1.00[ASN][1000 genomes]
rs2228265	1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs34278260	1.00[ASN][1000 genomes]
rs41270062	1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs56987668	0.85[EUR][1000 genomes]
rs57229653	1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57794912	1.00[ASN][1000 genomes]
rs57856268	1.00[ASN][1000 genomes]
rs59757151	1.00[ASN][1000 genomes]
rs59895076	1.00[ASN][1000 genomes]
rs60569490	1.00[ASN][1000 genomes]
rs61562178	0.85[EUR][1000 genomes]
rs61734578	1.00[ASN][1000 genomes]
rs6457817	1.00[ASN][1000 genomes]
rs6900879	1.00[ASN][1000 genomes]
rs6901580	1.00[ASN][1000 genomes]
rs6905732	1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6923025	1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73407641	1.00[ASN][1000 genomes]
rs73407650	1.00[ASN][1000 genomes]
rs73407675	1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	1.00[ASN][1000 genomes]
rs73409769	1.00[ASN][1000 genomes]
rs73409774	1.00[ASN][1000 genomes]
rs73409778	1.00[ASN][1000 genomes]
rs73409793	1.00[ASN][1000 genomes]
rs73411706	1.00[ASN][1000 genomes]
rs73411720	1.00[ASN][1000 genomes]
rs73411726	1.00[ASN][1000 genomes]
rs73411797	1.00[ASN][1000 genomes]
rs73746425	1.00[ASN][1000 genomes]
rs73746430	1.00[ASN][1000 genomes]
rs743965	1.00[ASN][1000 genomes]
rs7773319	1.00[ASN][1000 genomes]
rs9462062	1.00[ASN][1000 genomes]
rs9462064	1.00[ASN][1000 genomes]
rs9469960	1.00[ASN][1000 genomes]
rs9469967	1.00[ASN][1000 genomes]
rs9658058	0.85[EUR][1000 genomes]
rs9658127	1.00[ASN][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9942465	1.00[ASN][1000 genomes]
rs9942489	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
8	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
9	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
10	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
11	nsv885800	chr6:35394247-35406153	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35395200-35404400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:35397200-35403400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:35397400-35403600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:35398400-35404400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:35400200-35403400	Weak transcription	Small Intestine	intestine
6	chr6:35400600-35413800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:35401800-35405000	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:35402000-35405800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:35402200-35403600	Enhancers	Left Ventricle	heart
10	chr6:35402200-35403600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:35402200-35403800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:35402200-35404200	Enhancers	Adipose Nuclei	Adipose
13	chr6:35402600-35403800	Enhancers	Fetal Heart	heart
14	chr6:35402800-35403400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:35402800-35403400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:35402800-35403400	Enhancers	Colon Smooth Muscle	Colon
17	chr6:35402800-35403400	Enhancers	Right Atrium	heart
18	chr6:35402800-35403600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:35402800-35403600	Enhancers	Liver	Liver
20	chr6:35402800-35403600	Enhancers	Psoas Muscle	Psoas
21	chr6:35402800-35403600	Enhancers	Hela-S3	cervix
22	chr6:35402800-35403800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:35402800-35404000	Enhancers	Right Ventricle	heart
24	chr6:35402800-35404200	Enhancers	Fetal Intestine Large	intestine
25	chr6:35402800-35404800	Enhancers	Fetal Intestine Small	intestine
26	chr6:35402800-35405200	Enhancers	Placenta	Placenta
27	chr6:35402800-35405800	Bivalent Enhancer	HepG2	liver
28	chr6:35403000-35403400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr6:35403000-35403400	Enhancers	Spleen	Spleen
30	chr6:35403000-35404400	Enhancers	Colonic Mucosa	Colon
31	chr6:35403000-35404400	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr6:35403000-35405000	Weak transcription	Fetal Stomach	stomach
33	chr6:35403200-35403400	Enhancers	Brain Hippocampus Middle	brain
34	chr6:35403200-35403400	Enhancers	Fetal Muscle Trunk	muscle
35	chr6:35403200-35403400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr6:35403200-35404800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:35403200-35404800	Weak transcription	Fetal Lung	lung
38	chr6:35403200-35405000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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