Variant report

Variant	rs56987668
Chromosome Location	chr6:35319253-35319254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35315105..35319537-chr6:35325978..35330834,4	K562	blood:
2	chr6:35319034..35321264-chr6:35325609..35328038,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs34474204	1.00[ASN][1000 genomes]
rs59654131	1.00[ASN][1000 genomes]
rs61280851	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61562178	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61592141	0.85[EUR][1000 genomes]
rs6457820	0.83[ASN][1000 genomes]
rs7744392	1.00[ASN][1000 genomes]
rs7758272	1.00[ASN][1000 genomes]
rs7771323	1.00[ASN][1000 genomes]
rs9658058	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658061	1.00[ASN][1000 genomes]
rs9658080	1.00[ASN][1000 genomes]
rs9942489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv885798	chr6:35318784-35329406	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:35311600-35320400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:35311600-35327600	Weak transcription	A549	lung
8	chr6:35311800-35320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:35311800-35324000	Weak transcription	Right Atrium	heart
10	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
11	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
12	chr6:35312200-35326400	Weak transcription	Fetal Brain Female	brain
13	chr6:35312600-35324600	Weak transcription	Brain Germinal Matrix	brain
14	chr6:35312600-35324800	Weak transcription	Fetal Heart	heart
15	chr6:35312800-35326800	Weak transcription	Fetal Brain Male	brain
16	chr6:35312800-35327400	Strong transcription	Fetal Stomach	stomach
17	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
18	chr6:35313200-35320400	Weak transcription	Fetal Kidney	kidney
19	chr6:35313800-35325200	Strong transcription	Liver	Liver
20	chr6:35314000-35325800	Strong transcription	Adipose Nuclei	Adipose
21	chr6:35314400-35322400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:35314800-35322200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:35314800-35322200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:35314800-35325600	Strong transcription	Placenta	Placenta
25	chr6:35314800-35327000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:35315000-35319400	Weak transcription	Colonic Mucosa	Colon
27	chr6:35315000-35325600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:35315200-35323800	Weak transcription	Brain Angular Gyrus	brain
29	chr6:35315200-35326800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:35316000-35328600	Strong transcription	Duodenum Mucosa	Duodenum
31	chr6:35316400-35319400	Weak transcription	Brain Substantia Nigra	brain
32	chr6:35316400-35320200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:35316400-35320400	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:35316600-35319400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:35316600-35319400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:35316600-35319600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr6:35316600-35320200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:35316600-35320600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:35316600-35323200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:35316600-35324800	Strong transcription	Fetal Muscle Leg	muscle
41	chr6:35316800-35319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:35316800-35319600	Weak transcription	Fetal Thymus	thymus
43	chr6:35316800-35319800	Weak transcription	Gastric	stomach
44	chr6:35316800-35320200	Weak transcription	NHEK	skin
45	chr6:35316800-35320400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr6:35316800-35320400	Weak transcription	Spleen	Spleen
47	chr6:35316800-35320400	Weak transcription	HUVEC	blood vessel
48	chr6:35316800-35320400	Weak transcription	K562	blood
49	chr6:35316800-35320800	Genic enhancers	Primary T cells fromperipheralblood	blood
50	chr6:35316800-35323800	Weak transcription	Pancreas	Pancrea

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