Variant report

Variant	rs73405795
Chromosome Location	chr6:35141371-35141372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:19037338..19037912-chr6:35141074..35141644,2	MCF-7	breast:
2	chr6:35141167..35143005-chr6:35157807..35160174,2	MCF-7	breast:
3	chr6:35136063..35139125-chr6:35139498..35141793,3	K562	blood:
4	chr6:35139838..35142801-chr6:35145125..35146639,2	K562	blood:
5	chr6:35116846..35119289-chr6:35140930..35142825,2	MCF-7	breast:
6	chr6:35139023..35142448-chr6:35162991..35165848,3	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1034450	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs12110520	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111424	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868695	1.00[ASN][1000 genomes]
rs16868699	1.00[ASN][1000 genomes]
rs16872293	1.00[ASN][1000 genomes]
rs16873902	1.00[AMR][1000 genomes]
rs16874216	1.00[ASN][1000 genomes]
rs17511800	1.00[AMR][1000 genomes]
rs2004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187903	1.00[ASN][1000 genomes]
rs2228265	1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs2894400	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34278260	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34644591	1.00[ASN][1000 genomes]
rs35455943	1.00[EUR][1000 genomes]
rs41270046	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270048	0.81[EUR][1000 genomes]
rs41270062	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs56809926	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229653	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57794912	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57976333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58796597	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58850273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59895076	1.00[ASN][1000 genomes]
rs60086237	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60113507	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60569490	1.00[ASN][1000 genomes]
rs61734578	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6900879	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901580	1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6923025	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73403830	1.00[ASN][1000 genomes]
rs73403834	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405709	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405725	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407641	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407650	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407675	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	1.00[ASN][1000 genomes]
rs73409769	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73409774	1.00[ASN][1000 genomes]
rs73409778	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73409793	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73411706	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73411720	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73411726	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73411781	1.00[AMR][1000 genomes]
rs73411797	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs743965	1.00[ASN][1000 genomes]
rs7773319	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462064	1.00[ASN][1000 genomes]
rs9469960	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469967	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658079	1.00[AMR][1000 genomes]
rs9658127	1.00[ASN][1000 genomes]
rs9658129	1.00[AMR][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9658132	1.00[AMR][1000 genomes]
rs9658135	1.00[AMR][1000 genomes]
rs9942465	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35130600-35141400	Weak transcription	Brain Substantia Nigra	brain
2	chr6:35135000-35148800	Weak transcription	Esophagus	oesophagus
3	chr6:35137000-35141600	Weak transcription	Fetal Heart	heart
4	chr6:35137000-35141600	Weak transcription	Left Ventricle	heart
5	chr6:35137000-35148800	Weak transcription	Right Atrium	heart
6	chr6:35137400-35142200	Enhancers	Osteobl	bone
7	chr6:35137600-35141600	Weak transcription	Brain Angular Gyrus	brain
8	chr6:35137600-35145200	Weak transcription	Fetal Kidney	kidney
9	chr6:35138000-35142400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:35139000-35142000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:35139000-35146000	Weak transcription	NHLF	lung
12	chr6:35139200-35141400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:35139600-35141400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:35139600-35141400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:35140000-35141800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:35140200-35142000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:35140200-35142000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:35140200-35142400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:35140400-35142200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:35140400-35142200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:35140600-35141400	Enhancers	Hela-S3	cervix
22	chr6:35140600-35141600	Enhancers	HMEC	breast
23	chr6:35140600-35141800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:35140600-35141800	Enhancers	NHEK	skin
25	chr6:35140800-35142000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:35140800-35142200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:35141000-35142000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:35141000-35142000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:35141000-35142000	Enhancers	NHDF-Ad	bronchial
30	chr6:35141000-35142200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:35141000-35142200	Enhancers	HSMMtube	muscle
32	chr6:35141200-35141600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:35141200-35141600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:35141200-35141600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:35141200-35141600	Bivalent Enhancer	HUVEC	blood vessel
36	chr6:35141200-35141800	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr6:35141200-35142000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:35141200-35142000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
39	chr6:35141200-35142000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
40	chr6:35141200-35142000	Enhancers	Brain Hippocampus Middle	brain
41	chr6:35141200-35142000	Bivalent Enhancer	Placenta	Placenta
42	chr6:35141200-35142000	Enhancers	A549	lung
43	chr6:35141200-35142000	Enhancers	HSMM	muscle
44	chr6:35141200-35142000	Enhancers	NH-A	brain
45	chr6:35141200-35142800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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