Variant report

Variant	rs73403834
Chromosome Location	chr6:35015957-35015958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35015097..35016900-chr6:35181669..35184429,2	K562	blood:
2	chr6:35002495..35005140-chr6:35015377..35017563,2	K562	blood:

Variant related genes	Relation type
ENSG00000146197	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1034450	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868695	1.00[ASN][1000 genomes]
rs16868699	1.00[ASN][1000 genomes]
rs16872293	1.00[ASN][1000 genomes]
rs2004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs2894400	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34644591	1.00[ASN][1000 genomes]
rs35455943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41270046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270048	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41270062	1.00[ASN][1000 genomes]
rs56809926	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229653	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57794912	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57976333	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58796597	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58850273	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59895076	1.00[ASN][1000 genomes]
rs60086237	1.00[ASN][1000 genomes]
rs60113507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900879	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901580	1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923025	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	1.00[ASN][1000 genomes]
rs73403830	1.00[ASN][1000 genomes]
rs73403837	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405795	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407641	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407650	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407675	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs7773319	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462064	1.00[ASN][1000 genomes]
rs9469960	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469967	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:34994600-35036000	Weak transcription	K562	blood
3	chr6:35009000-35018800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:35009200-35016200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:35009400-35016800	Enhancers	HUVEC	blood vessel
6	chr6:35009600-35016000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:35009600-35016000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:35009800-35016000	Enhancers	Brain Angular Gyrus	brain
9	chr6:35009800-35018800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:35010000-35016000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:35010000-35017200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:35010000-35018200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:35010200-35017600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:35010200-35018000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:35010400-35018600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:35010400-35019000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:35010600-35017200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr6:35011000-35017600	Enhancers	Fetal Muscle Leg	muscle
19	chr6:35011000-35018000	Enhancers	Stomach Mucosa	stomach
20	chr6:35011000-35018400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:35011200-35016600	Enhancers	Adipose Nuclei	Adipose
22	chr6:35011400-35018600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr6:35011800-35018400	Enhancers	Fetal Kidney	kidney
24	chr6:35011800-35019400	Enhancers	Dnd41	blood
25	chr6:35012000-35018400	Enhancers	Duodenum Mucosa	Duodenum
26	chr6:35012000-35020000	Genic enhancers	Fetal Intestine Small	intestine
27	chr6:35012200-35019200	Enhancers	Fetal Lung	lung
28	chr6:35012200-35019200	Enhancers	Fetal Thymus	thymus
29	chr6:35012400-35016600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:35012600-35016200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr6:35012800-35016600	Enhancers	Fetal Stomach	stomach
32	chr6:35012800-35017800	Enhancers	Small Intestine	intestine
33	chr6:35013000-35016400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:35013000-35016800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:35013000-35018000	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr6:35013200-35018600	Weak transcription	HepG2	liver
37	chr6:35013600-35016400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr6:35013800-35018800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:35014000-35016000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:35014200-35016200	Enhancers	Osteobl	bone
41	chr6:35014200-35016400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr6:35014200-35016600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr6:35014200-35017400	Enhancers	NHDF-Ad	bronchial
44	chr6:35014400-35017400	Enhancers	NHLF	lung
45	chr6:35014400-35019200	Enhancers	Placenta	Placenta
46	chr6:35014600-35016000	Enhancers	Thymus	Thymus
47	chr6:35014600-35016200	Enhancers	HSMM	muscle
48	chr6:35014600-35016400	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr6:35014600-35016400	Enhancers	Esophagus	oesophagus
50	chr6:35014600-35016800	Enhancers	Primary T helper cells fromperipheralblood	blood

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