Variant report

Variant	rs9470033
Chromosome Location	chr6:35425263-35425264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35419142..35422512-chr6:35424570..35429105,6	MCF-7	breast:
2	chr6:35423795..35426623-chr6:35465037..35468781,3	K562	blood:
3	chr6:35424729..35431814-chr6:35432688..35440099,20	K562	blood:
4	chr6:35423275..35426107-chr6:35428625..35431307,2	MCF-7	breast:
5	chr6:35425207..35426152-chr6:35435554..35436139,3	K562	blood:
6	chr6:35417485..35421526-chr6:35423771..35426864,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11553979	1.00[ASN][1000 genomes]
rs11962317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876572	1.00[CEU][hapmap]
rs16876584	1.00[ASN][1000 genomes]
rs16876587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800376	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs41271261	1.00[ASN][1000 genomes]
rs45479891	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6457823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6914178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6927202	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746718	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767821	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7768070	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462087	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462088	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9470027	0.95[ASN][1000 genomes]
rs9470029	0.86[YRI][hapmap]
rs9470030	0.95[ASN][1000 genomes]
rs9470035	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470038	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
4	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
6	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35421000-35427200	Weak transcription	Thymus	Thymus
2	chr6:35421000-35435400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:35421200-35425600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:35421200-35425600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:35421200-35426200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:35421200-35435200	Weak transcription	Brain Angular Gyrus	brain
7	chr6:35421200-35435400	Weak transcription	Brain Anterior Caudate	brain
8	chr6:35421400-35425600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:35421400-35425800	Weak transcription	Brain Substantia Nigra	brain
10	chr6:35421400-35435400	Weak transcription	Colonic Mucosa	Colon
11	chr6:35421400-35435400	Weak transcription	Fetal Kidney	kidney
12	chr6:35421400-35435400	Weak transcription	Pancreas	Pancrea
13	chr6:35421600-35427200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:35421600-35433800	Weak transcription	HUVEC	blood vessel
15	chr6:35421600-35435200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:35421600-35435200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:35421600-35435400	Weak transcription	A549	lung
18	chr6:35421600-35435400	Weak transcription	NH-A	brain
19	chr6:35421800-35431000	Weak transcription	Liver	Liver
20	chr6:35422000-35425400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:35422000-35427000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:35422000-35430200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:35422200-35435200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:35422200-35435400	Weak transcription	Small Intestine	intestine
25	chr6:35422400-35426000	Weak transcription	NHLF	lung
26	chr6:35422400-35427000	Weak transcription	GM12878-XiMat	blood
27	chr6:35422400-35430200	Weak transcription	HSMM	muscle
28	chr6:35422400-35434800	Strong transcription	Fetal Intestine Small	intestine
29	chr6:35422600-35427600	Strong transcription	HepG2	liver
30	chr6:35422600-35429200	Strong transcription	Dnd41	blood
31	chr6:35422600-35435400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:35422800-35425400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr6:35422800-35425800	Weak transcription	Adipose Nuclei	Adipose
34	chr6:35422800-35426000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr6:35422800-35426800	Weak transcription	Osteobl	bone
36	chr6:35422800-35427000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:35422800-35427000	Weak transcription	HSMMtube	muscle
38	chr6:35422800-35427200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:35422800-35431000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:35422800-35434800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:35422800-35434800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:35422800-35435200	Weak transcription	Fetal Thymus	thymus
43	chr6:35422800-35435400	Weak transcription	Fetal Brain Male	brain
44	chr6:35422800-35435600	Weak transcription	Right Atrium	heart
45	chr6:35423000-35425600	Weak transcription	HMEC	breast
46	chr6:35423000-35426000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:35423000-35426000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:35423000-35427200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:35423000-35428400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:35423000-35428600	Strong transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links