Variant report

Variant	rs9470027
Chromosome Location	chr6:35416759-35416760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35415818..35424678-chr6:35432486..35440672,36	K562	blood:
2	chr6:35329516..35331357-chr6:35414817..35417634,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11553979	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11962317	0.95[ASN][1000 genomes]
rs16876584	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16876587	0.95[ASN][1000 genomes]
rs3800376	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41271261	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45479891	0.95[ASN][1000 genomes]
rs6457822	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457823	0.95[ASN][1000 genomes]
rs6457824	0.89[ASN][1000 genomes]
rs6914178	0.95[ASN][1000 genomes]
rs6926662	0.93[ASN][1000 genomes]
rs6927202	0.95[ASN][1000 genomes]
rs6927367	0.95[ASN][1000 genomes]
rs7746718	0.95[ASN][1000 genomes]
rs7767821	0.86[ASN][1000 genomes]
rs7768070	0.95[ASN][1000 genomes]
rs9462087	0.91[ASN][1000 genomes]
rs9462088	0.95[ASN][1000 genomes]
rs9462089	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470030	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470033	0.95[ASN][1000 genomes]
rs9470035	0.95[ASN][1000 genomes]
rs9470038	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
5	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
6	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
7	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
8	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35403400-35419400	Weak transcription	Right Atrium	heart
2	chr6:35406800-35419200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:35411200-35419600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:35411400-35419400	Weak transcription	NHEK	skin
5	chr6:35411600-35419400	Weak transcription	HMEC	breast
6	chr6:35411800-35419200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:35413800-35417000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:35413800-35417400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:35413800-35419400	Weak transcription	Pancreas	Pancrea
10	chr6:35414000-35417000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:35414000-35417000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:35414000-35417000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:35414000-35417000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:35414000-35419200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:35414000-35419200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:35414200-35417000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:35414200-35417400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:35414200-35419000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:35414200-35419000	Weak transcription	Placenta	Placenta
20	chr6:35414200-35419600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:35414400-35417400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:35414400-35419600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:35416200-35418000	Enhancers	Fetal Muscle Trunk	muscle
24	chr6:35416400-35419200	Bivalent Enhancer	HepG2	liver
25	chr6:35416600-35419400	Weak transcription	Brain Substantia Nigra	brain

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