Variant report

Variant	rs11756691
Chromosome Location	chr6:33571483-33571484
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33569313..33571736-chr6:33599981..33602556,2	K562	blood:
2	chr6:33556983..33559426-chr6:33569915..33571800,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10947410	0.84[AFR][1000 genomes]
rs56717418	0.92[ASN][1000 genomes]
rs57831685	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59600351	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59932271	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs61046060	0.92[ASN][1000 genomes]
rs62407572	0.96[ASN][1000 genomes]
rs62407594	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62407595	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6457734	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6457735	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6457736	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909440	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6909561	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6929022	0.97[ASN][1000 genomes]
rs6929774	0.84[AFR][1000 genomes]
rs6929819	0.84[AFR][1000 genomes]
rs6930081	0.84[AFR][1000 genomes]
rs7741845	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745060	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7763103	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7766694	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9469520	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
5	nsv5250	chr6:33565017-33598370	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33567600-33571600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:33567600-33572800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:33567600-33572800	Weak transcription	A549	lung
4	chr6:33567600-33572800	Weak transcription	HSMMtube	muscle
5	chr6:33567600-33574200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:33567600-33575800	Weak transcription	Right Atrium	heart
7	chr6:33567600-33575800	Weak transcription	Right Ventricle	heart
8	chr6:33567800-33571800	Weak transcription	Lung	lung
9	chr6:33567800-33572800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:33567800-33574400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:33567800-33575000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:33567800-33575400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:33568600-33571600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:33568600-33574400	Weak transcription	HMEC	breast
15	chr6:33568800-33571600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:33568800-33571600	Weak transcription	Placenta	Placenta
17	chr6:33568800-33572000	Weak transcription	Hela-S3	cervix
18	chr6:33570400-33572200	Enhancers	Fetal Intestine Large	intestine
19	chr6:33570800-33573400	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:33571000-33572200	Enhancers	Fetal Intestine Small	intestine
21	chr6:33571000-33572800	Weak transcription	HepG2	liver
22	chr6:33571200-33571600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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