Variant report

Variant	rs7745060
Chromosome Location	chr6:33567288-33567289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33557038..33558663-chr6:33565418..33568204,3	K562	blood:
2	chr6:33566688..33568911-chr6:33636835..33638571,2	K562	blood:
3	chr6:33559755..33561474-chr6:33565706..33568231,2	K562	blood:

Variant related genes	Relation type
ENSG00000197251	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11756691	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56717418	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57831685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59600351	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59932271	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61046060	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62407572	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62407594	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62407595	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457733	0.84[AFR][1000 genomes]
rs6457734	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457735	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6457736	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6909440	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6909561	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6929022	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7741845	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7763103	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766694	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9469520	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
5	esv992246	chr6:33561708-33570974	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv5250	chr6:33565017-33598370	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33559600-33569800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:33561600-33567400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:33561600-33567400	Weak transcription	NHLF	lung
4	chr6:33561600-33570400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:33564400-33567800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:33564800-33567400	Enhancers	Fetal Thymus	thymus
7	chr6:33565400-33567800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:33566000-33567400	Weak transcription	Lung	lung
9	chr6:33566000-33571000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:33566200-33568400	Weak transcription	Primary T cells from cord blood	blood
11	chr6:33566800-33568400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:33567000-33567800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:33567000-33567800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:33567000-33567800	Flanking Active TSS	Hela-S3	cervix
15	chr6:33567000-33567800	Enhancers	NHEK	skin
16	chr6:33567000-33568000	Enhancers	HMEC	breast
17	chr6:33567200-33567400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr6:33567200-33567400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:33567200-33567400	Enhancers	HepG2	liver
20	chr6:33567200-33567600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:33567200-33567600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:33567200-33567600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:33567200-33567600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:33567200-33567600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:33567200-33567600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:33567200-33567600	Enhancers	Primary B cells from peripheral blood	blood
27	chr6:33567200-33567600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr6:33567200-33567600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr6:33567200-33567600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:33567200-33567600	Enhancers	Colonic Mucosa	Colon
31	chr6:33567200-33567600	Enhancers	Psoas Muscle	Psoas
32	chr6:33567200-33567600	Enhancers	Right Atrium	heart
33	chr6:33567200-33567600	Enhancers	Right Ventricle	heart
34	chr6:33567200-33567600	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr6:33567200-33567600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr6:33567200-33567600	Enhancers	A549	lung
37	chr6:33567200-33567600	Enhancers	HSMMtube	muscle
38	chr6:33567200-33567600	Enhancers	NHDF-Ad	bronchial
39	chr6:33567200-33567800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:33567200-33567800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:33567200-33567800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:33567200-33567800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:33567200-33567800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr6:33567200-33567800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:33567200-33567800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:33567200-33567800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:33567200-33567800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:33567200-33567800	Enhancers	Duodenum Mucosa	Duodenum
49	chr6:33567200-33567800	Enhancers	Esophagus	oesophagus
50	chr6:33567200-33567800	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links