Variant report

Variant	rs11756904
Chromosome Location	chr6:150410900-150410901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150410116..150412744-chr6:150428842..150431815,2	K562	blood:
2	chr6:150409275..150411139-chr6:150425128..150427756,2	K562	blood:
3	chr6:150410347..150413118-chr6:150413236..150416818,3	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11155696	0.82[JPT][hapmap]
rs11754434	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11754488	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11754987	0.83[JPT][hapmap]
rs11755079	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11756945	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11759611	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1194970	0.87[ASN][1000 genomes]
rs13198863	0.83[JPT][hapmap]
rs13201209	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13209192	0.82[JPT][hapmap]
rs13216978	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1748295	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35742354	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3860823	0.82[JPT][hapmap]
rs470138	0.81[CEU][hapmap]
rs489664	0.91[ASN][1000 genomes]
rs491336	0.93[ASN][1000 genomes]
rs562425	0.83[JPT][hapmap]
rs563278	0.83[JPT][hapmap]
rs67804438	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs682942	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs683002	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs763574	0.83[JPT][hapmap]
rs7738164	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7753353	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7765587	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7767719	0.80[EUR][1000 genomes]
rs789819	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs789820	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs789821	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs789822	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs789823	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs789824	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs789825	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs789826	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs789827	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs789828	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs789829	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs806072	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322242	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9322243	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9371701	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9383663	0.80[EUR][1000 genomes]
rs9397624	0.80[EUR][1000 genomes]
rs9479403	0.82[JPT][hapmap]
rs9479405	0.82[JPT][hapmap]
rs9479513	0.82[JPT][hapmap]
rs9479622	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1016239	chr6:150407607-150424171	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1024915	chr6:150407607-150425510	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150408800-150412400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150409000-150412400	Weak transcription	HMEC	breast
3	chr6:150409000-150412600	Weak transcription	NHEK	skin
4	chr6:150409000-150413800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150410000-150412400	Weak transcription	Brain Angular Gyrus	brain
6	chr6:150410200-150411400	Weak transcription	Brain Substantia Nigra	brain
7	chr6:150410200-150411600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:150410200-150412400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:150410200-150412600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:150410400-150411600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:150410400-150411600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:150410400-150412400	Weak transcription	Brain Anterior Caudate	brain
13	chr6:150410400-150421800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:150410600-150412400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:150410600-150414400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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