Variant report

Variant	rs1194970
Chromosome Location	chr6:150374468-150374469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150370900..150376205-chr6:150377396..150379934,4	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11155696	0.85[AFR][1000 genomes]
rs11155697	0.85[AFR][1000 genomes]
rs11754434	0.88[ASN][1000 genomes]
rs11754488	0.88[ASN][1000 genomes]
rs11754987	0.81[AFR][1000 genomes]
rs11756904	0.87[ASN][1000 genomes]
rs11756945	0.88[ASN][1000 genomes]
rs11759611	0.88[ASN][1000 genomes]
rs13198863	0.83[AFR][1000 genomes]
rs13199618	0.93[EUR][1000 genomes]
rs13201209	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13216978	0.87[ASN][1000 genomes]
rs1748295	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2010259	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2184452	0.94[EUR][1000 genomes]
rs34006533	0.83[AFR][1000 genomes]
rs35742354	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs472469	0.95[EUR][1000 genomes]
rs489664	0.82[ASN][1000 genomes]
rs491336	0.84[ASN][1000 genomes]
rs562425	0.81[AFR][1000 genomes]
rs563278	0.99[AFR][1000 genomes]
rs612770	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs682942	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs683002	0.80[ASN][1000 genomes]
rs763574	0.83[AFR][1000 genomes]
rs7738164	0.83[ASN][1000 genomes]
rs7753353	0.83[ASN][1000 genomes]
rs7765587	0.83[ASN][1000 genomes]
rs789819	0.88[ASN][1000 genomes]
rs789820	0.82[ASN][1000 genomes]
rs789821	0.82[ASN][1000 genomes]
rs789822	0.81[ASN][1000 genomes]
rs789823	0.81[ASN][1000 genomes]
rs789824	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs789825	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs789826	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs789827	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs789828	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs789829	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs806072	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs912557	0.94[EUR][1000 genomes]
rs912558	0.94[EUR][1000 genomes]
rs9397137	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9478380	0.85[AFR][1000 genomes]
rs9479481	0.85[AFR][1000 genomes]
rs9479482	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv7375	chr6:150324114-150388625	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3344440	chr6:150324131-150388650	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3323918	chr6:150327978-150392099	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1026236	chr6:150360882-150408946	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv970178	chr6:150372759-150377389	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150374400-150375000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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