Variant report

Variant	rs11757746
Chromosome Location	chr6:13597502-13597503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13597383..13600646-chr6:13608396..13612792,3	K562	blood:
2	chr6:13592676..13594291-chr6:13596653..13598296,2	K562	blood:
3	chr6:13593712..13595899-chr6:13596044..13598245,2	MCF-7	breast:
4	chr6:13572042..13575671-chr6:13594976..13597521,3	K562	blood:
5	chr6:13593118..13602779-chr6:13610915..13617941,16	K562	blood:
6	chr6:13573888..13575914-chr6:13592707..13597506,4	MCF-7	breast:
7	chr6:13594729..13597639-chr6:13615367..13617083,2	MCF-7	breast:
8	chr6:13592378..13594291-chr6:13596653..13598641,2	K562	blood:
9	chr6:13586392..13588827-chr6:13593586..13598177,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000225921	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000124523	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11540716	1.00[MEX][hapmap]
rs441280	1.00[LWK][hapmap];1.00[MEX][hapmap]
rs7739153	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13575600-13608200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:13575600-13613800	Weak transcription	Stomach Mucosa	stomach
3	chr6:13575600-13614400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:13575800-13600000	Weak transcription	A549	lung
5	chr6:13575800-13614200	Weak transcription	HUVEC	blood vessel
6	chr6:13575800-13614600	Weak transcription	Right Atrium	heart
7	chr6:13576200-13614400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:13578600-13601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:13580400-13614800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:13585000-13600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:13585600-13613800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:13586800-13601600	Strong transcription	Primary B cells from cord blood	blood
13	chr6:13586800-13602200	Strong transcription	Fetal Stomach	stomach
14	chr6:13586800-13602400	Strong transcription	Brain Inferior Temporal Lobe	brain
15	chr6:13586800-13603000	Strong transcription	Primary T cells from cord blood	blood
16	chr6:13586800-13606800	Strong transcription	Stomach Smooth Muscle	stomach
17	chr6:13586800-13608000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:13587000-13599400	Strong transcription	Fetal Intestine Small	intestine
19	chr6:13587000-13602000	Strong transcription	Adipose Nuclei	Adipose
20	chr6:13587000-13602400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:13587000-13603000	Strong transcription	Fetal Muscle Leg	muscle
22	chr6:13587000-13608600	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr6:13587800-13600800	Weak transcription	HSMMtube	muscle
24	chr6:13588400-13614200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:13588600-13600800	Weak transcription	NHDF-Ad	bronchial
26	chr6:13588600-13611800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:13588600-13614000	Weak transcription	NHLF	lung
28	chr6:13588600-13614400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:13588800-13614600	Weak transcription	Small Intestine	intestine
30	chr6:13589000-13608000	Strong transcription	Liver	Liver
31	chr6:13589000-13611800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:13589000-13614400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:13589800-13599800	Strong transcription	Spleen	Spleen
34	chr6:13590400-13601600	Strong transcription	Right Ventricle	heart
35	chr6:13590400-13608000	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr6:13590800-13599400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:13590800-13601600	Strong transcription	Duodenum Mucosa	Duodenum
38	chr6:13591000-13597600	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr6:13591000-13598600	Strong transcription	Brain Anterior Caudate	brain
40	chr6:13591000-13601600	Strong transcription	Brain Substantia Nigra	brain
41	chr6:13591000-13602200	Strong transcription	Ovary	ovary
42	chr6:13591000-13602600	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:13591200-13601800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:13591200-13607000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:13591200-13607000	Strong transcription	Left Ventricle	heart
46	chr6:13591400-13598200	Weak transcription	Fetal Kidney	kidney
47	chr6:13591400-13599200	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:13591400-13599400	Strong transcription	Fetal Intestine Large	intestine
49	chr6:13591400-13600800	Weak transcription	Fetal Heart	heart
50	chr6:13591400-13602000	Weak transcription	HSMM	muscle

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