Variant report

Variant	rs441280
Chromosome Location	chr6:13716442-13716443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:13715809-13716510	MCF10A-Er-Src	breast:	n/a	chr6:13716430-13716442

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13615378..13616963-chr6:13714230..13716669,2	K562	blood:
2	chr6:13658437..13687167-chr6:13707669..13717356,51	K562	blood:
3	chr6:13713710..13717343-chr6:13751875..13754798,3	MCF-7	breast:
4	chr6:13659651..13661542-chr6:13715805..13717920,2	MCF-7	breast:
5	chr6:13677099..13683232-chr6:13708060..13717356,16	K562	blood:
6	chr6:13709898..13716469-chr6:13809605..13815390,11	K562	blood:
7	chr6:13710738..13712943-chr6:13714753..13716732,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
RANBP9	TF binding region
ENSG00000252966	Chromatin interaction
ENSG00000225921	Chromatin interaction
ENSG00000010017	Chromatin interaction
ENSG00000050393	Chromatin interaction
ENSG00000261071	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11540716	1.00[MEX][hapmap]
rs11757746	1.00[LWK][hapmap];1.00[MEX][hapmap]
rs13209220	1.00[LWK][hapmap]
rs7739153	1.00[MEX][hapmap]
rs7742721	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv883451	chr6:13704341-13728670	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	nsv883452	chr6:13704341-13733565	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
4	esv3352859	chr6:13713873-13716971	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13712800-13716800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:13712800-13717000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:13713000-13716600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:13713600-13717200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:13714000-13718000	Weak transcription	Dnd41	blood
6	chr6:13714000-13722800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:13714000-13723400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:13715000-13716600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:13715000-13717000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:13715400-13716800	Enhancers	HepG2	liver
11	chr6:13716000-13717200	Weak transcription	Esophagus	oesophagus
12	chr6:13716000-13718400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:13716400-13716600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr6:13716400-13717400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links