Variant report

Variant	rs11757916
Chromosome Location	chr6:14003789-14003790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12190765	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs280155	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs280157	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs280161	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs280172	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs280173	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs280176	0.96[EUR][1000 genomes]
rs280178	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs280180	0.89[EUR][1000 genomes]
rs280181	0.97[EUR][1000 genomes]
rs280186	0.96[EUR][1000 genomes]
rs280188	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4715723	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs579538	0.96[EUR][1000 genomes]
rs7752108	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs867204	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476344	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600995	chr6:13945067-14009231	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv600996	chr6:13954632-14014793	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14001200-14004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:14002000-14006000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:14002600-14006400	Weak transcription	NHLF	lung
4	chr6:14002800-14004800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:14003000-14012800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links