Variant report

Variant	rs280161
Chromosome Location	chr6:13976986-13976987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13931778..13934461-chr6:13976402..13978404,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11757916	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1192057	0.90[CEU][hapmap]
rs12190765	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs280152	0.85[CEU][hapmap]
rs280153	0.85[CEU][hapmap]
rs280154	0.85[CEU][hapmap]
rs280155	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs280157	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs280172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280178	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280180	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs280181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280186	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280188	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579538	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs867204	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9476344	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600995	chr6:13945067-14009231	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv600996	chr6:13954632-14014793	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13963400-13983400	Weak transcription	Hela-S3	cervix
2	chr6:13971800-13984200	Weak transcription	NHDF-Ad	bronchial
3	chr6:13973400-14002400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:13973600-13981000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:13974000-13978600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:13974200-13977200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:13974200-13979000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:13974400-13980600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:13974600-13977200	Weak transcription	Brain Germinal Matrix	brain
10	chr6:13974600-13977400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:13975000-13977400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:13975000-13980000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:13975200-13980600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:13975200-13984200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:13975400-13977400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:13975400-13990200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:13975600-13977000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:13975600-13977400	Weak transcription	Fetal Brain Female	brain
19	chr6:13975600-13978200	Strong transcription	K562	blood
20	chr6:13976200-13984400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:13976200-13984600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:13976400-13986600	Weak transcription	Fetal Lung	lung
23	chr6:13976800-13978000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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