Variant report

Variant	rs280152
Chromosome Location	chr6:13943781-13943782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1192057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280153	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280161	0.85[CEU][hapmap]
rs280169	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[EUR][1000 genomes]
rs280172	0.85[CEU][hapmap]
rs280173	0.85[CEU][hapmap]
rs280176	0.85[CEU][hapmap]
rs280181	0.85[CEU][hapmap]
rs408909	0.82[YRI][hapmap]
rs4715723	0.85[CEU][hapmap]
rs579538	0.86[ASW][hapmap];0.85[CEU][hapmap];0.85[MEX][hapmap]
rs7752108	0.85[CEU][hapmap]
rs7771397	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13927600-13944000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:13943000-13949400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:13943600-13945600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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