Variant report

Variant	rs280154
Chromosome Location	chr6:13946112-13946113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1192057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280161	0.85[CEU][hapmap]
rs280169	0.91[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs280172	0.85[CEU][hapmap]
rs280173	0.85[CEU][hapmap]
rs280176	0.85[CEU][hapmap]
rs280181	0.85[CEU][hapmap]
rs408909	0.93[YRI][hapmap]
rs4715723	0.85[CEU][hapmap]
rs579538	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs7752108	0.85[CEU][hapmap]
rs7771397	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600995	chr6:13945067-14009231	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13943000-13949400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13944800-13946600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:13945400-13947000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:13945800-13952600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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