Variant report

Variant	rs11758036
Chromosome Location	chr6:39336402-39336403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10484826	0.89[EUR][1000 genomes]
rs10484827	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11751171	1.00[AFR][1000 genomes]
rs11751584	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11751610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11752892	0.87[AMR][1000 genomes]
rs11753468	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11755129	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11756084	0.87[ASN][1000 genomes]
rs11756686	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11756848	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11757747	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758639	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11758789	0.87[ASN][1000 genomes]
rs1590760	0.89[EUR][1000 genomes]
rs16891940	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16892032	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17351024	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17428273	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17429762	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34369766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35376357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56370893	0.87[ASN][1000 genomes]
rs56979582	0.87[ASN][1000 genomes]
rs59352627	0.87[ASN][1000 genomes]
rs60227351	0.87[ASN][1000 genomes]
rs72858442	0.87[ASN][1000 genomes]
rs72858444	0.87[ASN][1000 genomes]
rs72858446	0.87[ASN][1000 genomes]
rs72858448	0.87[ASN][1000 genomes]
rs72858451	0.87[ASN][1000 genomes]
rs72858468	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72858469	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72858477	0.87[ASN][1000 genomes]
rs73731792	0.87[ASN][1000 genomes]
rs7454563	0.89[EUR][1000 genomes]
rs7742057	0.87[ASN][1000 genomes]
rs9296295	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39330000-39338200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:39330200-39337800	Weak transcription	Brain Angular Gyrus	brain
3	chr6:39330200-39338400	Weak transcription	Right Atrium	heart
4	chr6:39330600-39337800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:39331200-39337800	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:39331400-39338400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:39333000-39337200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:39333600-39338200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:39334000-39340000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:39335000-39336600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr6:39335000-39337800	Enhancers	Adipose Nuclei	Adipose
12	chr6:39335200-39338200	Enhancers	Fetal Lung	lung
13	chr6:39335400-39336600	Enhancers	Brain Anterior Caudate	brain
14	chr6:39336200-39337600	Weak transcription	Brain Substantia Nigra	brain
15	chr6:39336200-39338000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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