Variant report

Variant	rs16892032
Chromosome Location	chr6:39363070-39363071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10484827	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1109772	1.00[JPT][hapmap]
rs11751171	1.00[JPT][hapmap]
rs11751584	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11751610	1.00[ASN][1000 genomes]
rs11753468	1.00[ASN][1000 genomes]
rs11755807	1.00[JPT][hapmap]
rs11756084	1.00[ASN][1000 genomes]
rs11756686	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11756848	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11757747	0.87[ASN][1000 genomes]
rs11758036	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11758434	1.00[JPT][hapmap]
rs11758639	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11758789	1.00[ASN][1000 genomes]
rs16891904	1.00[JPT][hapmap]
rs16891940	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17351024	1.00[JPT][hapmap]
rs17428273	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17429762	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2758911	1.00[JPT][hapmap]
rs34369766	1.00[ASN][1000 genomes]
rs35376357	1.00[ASN][1000 genomes]
rs56370893	1.00[ASN][1000 genomes]
rs56979582	1.00[ASN][1000 genomes]
rs59352627	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60227351	1.00[ASN][1000 genomes]
rs72858442	1.00[ASN][1000 genomes]
rs72858444	1.00[ASN][1000 genomes]
rs72858446	1.00[ASN][1000 genomes]
rs72858448	1.00[ASN][1000 genomes]
rs72858451	1.00[ASN][1000 genomes]
rs72858468	1.00[ASN][1000 genomes]
rs72858469	1.00[ASN][1000 genomes]
rs72858477	1.00[ASN][1000 genomes]
rs73731792	1.00[ASN][1000 genomes]
rs7742057	1.00[ASN][1000 genomes]
rs9296295	0.91[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9462521	1.00[JPT][hapmap]
rs9471056	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39356000-39364000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:39356000-39369600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:39356400-39363200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:39357600-39365200	Weak transcription	Brain Substantia Nigra	brain
5	chr6:39361600-39364600	Enhancers	Fetal Brain Female	brain
6	chr6:39362400-39369600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:39362600-39367800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:39362600-39369600	Weak transcription	Brain Hippocampus Middle	brain

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