Variant report

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:39194267..39198294-chr6:39269067..39272722,11	MCF-7	breast:
2	chr6:39195692..39197449-chr6:39269693..39272549,3	K562	blood:
3	chr6:39195179..39198442-chr6:39267374..39272549,7	K562	blood:
4	chr6:39133945..39136207-chr6:39268865..39270685,2	K562	blood:
5	chr6:39133919..39134901-chr6:39269183..39270000,2	MCF-7	breast:
6	chr6:39163723..39165690-chr6:39268999..39271055,3	MCF-7	breast:
7	chr6:39157450..39158365-chr6:39269553..39270301,2	MCF-7	breast:
8	chr6:39243650..39250520-chr6:39262135..39271800,15	MCF-7	breast:
9	chr6:39133828..39135626-chr6:39269069..39271952,36	K562	blood:
10	chr6:39146215..39148913-chr6:39269564..39272045,2	MCF-7	breast:
11	chr6:39267482..39269226-chr6:39269492..39271428,2	MCF-7	breast:
12	chr6:38964813..38965597-chr6:39269534..39270104,3	K562	blood:
13	chr6:39131553..39138589-chr6:39265255..39275264,18	MCF-7	breast:
14	chr6:39235849..39239507-chr6:39267408..39272188,7	MCF-7	breast:
15	chr6:39265273..39267216-chr6:39269538..39271599,2	MCF-7	breast:
16	chr6:39235093..39238743-chr6:39267391..39271695,7	MCF-7	breast:
17	chr6:39197274..39197830-chr6:39269306..39269922,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164626	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1109772	1.00[JPT][hapmap]
rs11751171	1.00[JPT][hapmap]
rs11755807	1.00[JPT][hapmap]
rs11758434	1.00[JPT][hapmap]
rs12333104	1.00[CEU][hapmap]
rs16891904	1.00[JPT][hapmap]
rs16892032	1.00[JPT][hapmap]
rs2395715	1.00[CEU][hapmap]
rs2758911	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs731418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73731780	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462488	1.00[CEU][hapmap]
rs9462508	1.00[CEU][hapmap]
rs9462518	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9462519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462521	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471004	1.00[CEU][hapmap]
rs9471011	1.00[CEU][hapmap]
rs9471037	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9471047	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9471049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9471052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471091	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39262600-39270600	Weak transcription	Colonic Mucosa	Colon
2	chr6:39265400-39270800	Weak transcription	Fetal Lung	lung
3	chr6:39265400-39270800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:39265600-39280800	Weak transcription	Right Atrium	heart
5	chr6:39266200-39270800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:39266600-39270200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:39266600-39270400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:39266600-39270600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:39266600-39270600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:39267000-39270200	Weak transcription	Liver	Liver
11	chr6:39267600-39270200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:39269000-39271200	Enhancers	Placenta	Placenta
13	chr6:39269200-39270000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:39269400-39270400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:39269400-39271200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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