Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:39233505..39239976-chr6:39262109..39267318,6	MCF-7	breast:
2	chr6:39251247..39254688-chr6:39261897..39265141,3	K562	blood:
3	chr6:39237190..39240116-chr6:39261691..39264000,2	K562	blood:
4	chr6:39243650..39250520-chr6:39262135..39271800,15	MCF-7	breast:
5	chr6:39252986..39258546-chr6:39261978..39266984,8	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2395715	1.00[AFR][1000 genomes]
rs731418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73731780	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462488	1.00[AFR][1000 genomes]
rs9462495	1.00[AFR][1000 genomes]
rs9462518	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9462520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9471005	1.00[AFR][1000 genomes]
rs9471011	1.00[AFR][1000 genomes]
rs9471017	1.00[AFR][1000 genomes]
rs9471026	1.00[AFR][1000 genomes]
rs9471037	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9471047	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9471049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9471052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9471053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9471055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9471056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9471057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39248400-39263400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:39248400-39263400	Weak transcription	Right Atrium	heart
3	chr6:39257800-39265800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:39258000-39265600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:39260800-39263200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:39260800-39263200	Weak transcription	Ovary	ovary
7	chr6:39261400-39267400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:39261600-39263600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:39262000-39263400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:39262200-39263400	Weak transcription	Esophagus	oesophagus
11	chr6:39262400-39263200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:39262400-39263400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:39262400-39263800	Weak transcription	Liver	Liver
14	chr6:39262600-39270600	Weak transcription	Colonic Mucosa	Colon
15	chr6:39262800-39265400	Enhancers	Fetal Stomach	stomach
16	chr6:39263000-39263200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
17	chr6:39263000-39263400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:39263000-39263400	Enhancers	Fetal Muscle Trunk	muscle
19	chr6:39263000-39265400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr6:39263000-39266600	Enhancers	Placenta	Placenta

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