Variant report

Variant	rs9471017
Chromosome Location	chr6:39200550-39200551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2395715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462488	1.00[AFR][1000 genomes]
rs9462495	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9462518	1.00[AFR][1000 genomes]
rs9462519	1.00[AFR][1000 genomes]
rs9462520	1.00[AFR][1000 genomes]
rs9471005	1.00[AFR][1000 genomes]
rs9471011	1.00[AFR][1000 genomes]
rs9471026	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9471037	1.00[AFR][1000 genomes]
rs9471047	1.00[AFR][1000 genomes]
rs9471049	1.00[AFR][1000 genomes]
rs9471052	1.00[AFR][1000 genomes]
rs9471053	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39197400-39200600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:39197600-39200600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:39197600-39200600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:39197600-39200800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:39197800-39200600	Weak transcription	Fetal Intestine Large	intestine
6	chr6:39197800-39200600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:39197800-39200800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:39197800-39201000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:39197800-39201200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:39197800-39201600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:39199000-39200600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:39199000-39200600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:39199400-39207200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:39199800-39200600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:39200200-39207200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:39200400-39200800	Weak transcription	K562	blood
17	chr6:39200400-39201200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:39200400-39207000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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