Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39195841..39198403-chr6:39210259..39214055,4	K562	blood:

Variant related genes	Relation type
ENSG00000164626	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs73731732	0.86[ASN][1000 genomes]
rs73731738	0.86[ASN][1000 genomes]
rs9462488	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs9462495	1.00[AFR][1000 genomes]
rs9462508	1.00[CEU][hapmap]
rs9462518	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs9462519	1.00[AFR][1000 genomes]
rs9462520	1.00[AFR][1000 genomes]
rs9462521	1.00[CEU][hapmap]
rs9471004	1.00[CEU][hapmap]
rs9471005	1.00[AFR][1000 genomes]
rs9471011	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs9471017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9471020	0.86[ASN][1000 genomes]
rs9471026	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471037	1.00[AFR][1000 genomes]
rs9471047	1.00[AFR][1000 genomes]
rs9471049	1.00[AFR][1000 genomes]
rs9471052	1.00[AFR][1000 genomes]
rs9471053	1.00[AFR][1000 genomes]
rs9471056	1.00[CEU][hapmap]
rs9471091	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39208800-39215000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:39212000-39219000	Weak transcription	Esophagus	oesophagus
3	chr6:39212200-39215200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:39212600-39215200	Weak transcription	Placenta	Placenta
5	chr6:39213000-39214000	Enhancers	Fetal Thymus	thymus

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