Variant report

Variant	rs9471091
Chromosome Location	chr6:39372309-39372310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12333104	1.00[CEU][hapmap]
rs2395715	1.00[CEU][hapmap]
rs71571378	1.00[AMR][1000 genomes]
rs9462508	1.00[CEU][hapmap]
rs9462518	1.00[CEU][hapmap]
rs9462521	1.00[CEU][hapmap]
rs9471004	1.00[CEU][hapmap]
rs9471011	1.00[CEU][hapmap]
rs9471056	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39370000-39375200	Weak transcription	Brain Angular Gyrus	brain
2	chr6:39370800-39378600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:39371200-39375000	Weak transcription	NHDF-Ad	bronchial
4	chr6:39371200-39378600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:39371400-39375200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:39371400-39375600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:39371600-39372600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:39371600-39374200	Enhancers	Liver	Liver
9	chr6:39371600-39375400	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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