Variant report

Variant	rs9471011
Chromosome Location	chr6:39190520-39190521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39159091..39165465-chr6:39185781..39190794,6	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1593917	1.00[CEU][hapmap]
rs2395715	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs9462488	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs9462495	1.00[AFR][1000 genomes]
rs9462508	1.00[CEU][hapmap]
rs9462518	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs9462519	1.00[AFR][1000 genomes]
rs9462520	1.00[AFR][1000 genomes]
rs9462521	1.00[CEU][hapmap]
rs9471004	1.00[CEU][hapmap]
rs9471005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9471017	1.00[AFR][1000 genomes]
rs9471026	1.00[AFR][1000 genomes]
rs9471037	1.00[AFR][1000 genomes]
rs9471047	1.00[AFR][1000 genomes]
rs9471049	1.00[AFR][1000 genomes]
rs9471052	1.00[AFR][1000 genomes]
rs9471053	1.00[AFR][1000 genomes]
rs9471056	1.00[CEU][hapmap]
rs9471091	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39150600-39193800	Genic enhancers	Fetal Intestine Small	intestine
2	chr6:39156800-39193400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:39163800-39192800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:39169400-39193600	Enhancers	Liver	Liver
5	chr6:39174200-39195000	Enhancers	Stomach Mucosa	stomach
6	chr6:39178000-39193400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:39178600-39193200	Weak transcription	Thymus	Thymus
8	chr6:39182200-39195200	Enhancers	Fetal Lung	lung
9	chr6:39183200-39192800	Weak transcription	Right Atrium	heart
10	chr6:39183400-39192400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:39183600-39191000	Weak transcription	Esophagus	oesophagus
12	chr6:39184400-39191200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:39184400-39193400	Weak transcription	Hela-S3	cervix
14	chr6:39185000-39194400	Enhancers	Ovary	ovary
15	chr6:39185600-39192600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:39185800-39192000	Weak transcription	Adipose Nuclei	Adipose
17	chr6:39186000-39193800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:39186000-39193800	Genic enhancers	Fetal Intestine Large	intestine
19	chr6:39186200-39195000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:39186800-39191000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:39187000-39191400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:39187000-39191600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:39187600-39190800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:39187600-39191200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:39187600-39191600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:39187600-39192200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:39187600-39193400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr6:39187800-39192000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:39187800-39192200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:39187800-39192400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:39188000-39190800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:39188000-39191000	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:39188200-39191000	Genic enhancers	Fetal Thymus	thymus
34	chr6:39188200-39192600	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:39188400-39191400	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:39188800-39191000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr6:39188800-39195000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:39189000-39190800	Weak transcription	Fetal Kidney	kidney
39	chr6:39189000-39191000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:39189000-39191200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:39189000-39192400	Weak transcription	Spleen	Spleen
42	chr6:39189400-39191000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:39189400-39191000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:39189400-39191200	Weak transcription	Colonic Mucosa	Colon
45	chr6:39189400-39192800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:39189400-39193200	Weak transcription	Gastric	stomach
47	chr6:39189400-39194200	Transcr. at gene 5' and 3'	K562	blood
48	chr6:39189600-39191000	Weak transcription	Placenta	Placenta
49	chr6:39189600-39191200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:39189600-39191200	Weak transcription	Fetal Stomach	stomach

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